ensembl.htmlpage {Agi4x44PreProcess}R Documentation

genes.rpt.agi (Internal function)

Description

Internal function to be used by genes.rpt.agi

Usage

ensembl.htmlpage(probe.ids, probe.chr, filename, annotation.package, title, othernames, table.head, table.center = TRUE)

Arguments

probe.ids
probe.chr
filename
annotation.package a character specifying the AGI annotation package: 'hgug4112a.db','mgug4122a.db'
title
othernames
table.head
table.center

Details

It writes an html file with a link to the ENSEMBL data base for each probe in the input.

Value

An html file

Author(s)

Pedro Lopez-Romero

See Also

genes.rpt.agi

Examples

## Not run: 
        data(dd)
        library(hgug4112a.db)
        PROBE_ID=dd$genes$ProbeName[200:210]
        probe.chr=dd$other$chr_coord[200:210,1]
        GENE_ID = unlist(lookUp(PROBE_ID, "hgug4112a.db", "ACCNUM") )
        gene.sym=lookUp(PROBE_ID,"hgug4112a.db","SYMBOL")
        filename=paste("Gen.Sets","example","html",sep=".")
        title="Replicated Gene"
        head <- c("PROBE ID","ACCNUM","SYMBOL","probe chr coord")

        ensembl.htmlpage(PROBE_ID,probe.chr,filename,"hgug4112a.db",
                                title, table.head=head,table.center = TRUE,
                                other=list(unlist(GENE_ID),unlist(gene.sym),unlist(probe.chr)))

## End(Not run)

[Package Agi4x44PreProcess version 1.2.0 Index]