ensembl.htmlpage {Agi4x44PreProcess} | R Documentation |
Internal function to be used by genes.rpt.agi
ensembl.htmlpage(probe.ids, probe.chr, filename, annotation.package, title, othernames, table.head, table.center = TRUE)
probe.ids |
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probe.chr |
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filename |
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annotation.package |
a character specifying the AGI annotation package: 'hgug4112a.db','mgug4122a.db' |
title |
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othernames |
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table.head |
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table.center |
It writes an html file with a link to the ENSEMBL data base for each probe in the input.
An html file
Pedro Lopez-Romero
## Not run: data(dd) library(hgug4112a.db) PROBE_ID=dd$genes$ProbeName[200:210] probe.chr=dd$other$chr_coord[200:210,1] GENE_ID = unlist(lookUp(PROBE_ID, "hgug4112a.db", "ACCNUM") ) gene.sym=lookUp(PROBE_ID,"hgug4112a.db","SYMBOL") filename=paste("Gen.Sets","example","html",sep=".") title="Replicated Gene" head <- c("PROBE ID","ACCNUM","SYMBOL","probe chr coord") ensembl.htmlpage(PROBE_ID,probe.chr,filename,"hgug4112a.db", title, table.head=head,table.center = TRUE, other=list(unlist(GENE_ID),unlist(gene.sym),unlist(probe.chr))) ## End(Not run)