PFAM-class {AnnBuilder} | R Documentation |
This class is a sub-class of pubRepo that is implemented specifically to parse the data ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/Pfam-A.full.gz
Objects can be created by calls of the form new("PFAM", ...)
.
A constructor (PFAM) is available and should be used to instatiate
objects of PFAM
srcUrl
:"character", from class
"pubRepo"
a character string for the surce url where data
will be downloaded/processedfromWeb
:"logical"
for
inficating whether the source file should be accessed through the
web or locally
Class "pubRepo"
, directly.
signature(object = "PFAM")
: A method to parse
a source file using a specified parserTing-Yuan Liu
ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/Pfam-A.full.gz
## Not run: ## create PFAM class pfamObj <- PFAM(srcUrl="ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/Pfam-A.full.gz", fromWeb=TRUE) tableList <- parseData(pfamObj) ## End(Not run)