getAE {ArrayExpress} | R Documentation |
getAE
downloads and extracts the MAGE-TAB files from an
ArrayExpress data set.
getAE(input, path = ".", save = TRUE, type = "full")
input |
is an ArrayExpress identifier. |
path |
is the name of the directory in which the files downloaded on the ArrayExpress repository will be extracted. |
save |
if TRUE, the files downloaded from the database will not be deleted from path after executing the function. |
type |
can be 'raw' to download and extract only the raw data, 'processed' to download and extract only the processed data or 'full' to have both raw and processed data. |
A list with the names of the files that
have been downloaded and extracted.
Audrey Kauffmann Maintainer: <audrey@ebi.ac.uk>
ArrayExpress
, magetab2bioc
, queryAE
TABM25 = getAE("E-TABM-25", type = "raw")