geneFilter |
filter an ExpressionSet using different methods |
getAdjP |
access the adjPVal slot from regressResult or interactionResult class |
getAdjP,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
getAdjP,regressResult-method |
Class to Contain the Regression Result |
getAnnotation |
access the annotation slot from the regressResult or interactionResult slot |
getAnnotation,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
getAnnotation,regressResult-method |
Class to Contain the Regression Result |
getCompare1 |
Access the Compare1 slot from the contrastMatrix |
getCompare1,contrastMatrix-method |
Class to Contain the Contrast Matrix that Used for Linear Regression |
getCompare2 |
Access the compare2 slot from the contrastMatrix class |
getCompare2,contrastMatrix-method |
Class to Contain the Contrast Matrix that Used for Linear Regression |
getContrast |
Access the contrast matrix from the contrastMatrix class |
getContrast,contrastMatrix-method |
Class to Contain the Contrast Matrix that Used for Linear Regression |
getContrast,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
getContrast,regressResult-method |
Class to Contain the Regression Result |
getCovariates |
Accessing the covariates from the designMatrix class |
getCovariates,designMatrix-method |
Class to Contain the Design Matrix that Used for Linear Regression |
getDesign |
Access the design matrix from the designMatrix class |
getDesign,designMatrix-method |
Class to Contain the Design Matrix that Used for Linear Regression |
getF |
access the foldChange slot from regressionResult or interactionResult class |
getF,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
getF,regressResult-method |
Class to Contain the Regression Result |
getFC |
Access the foldChange slot from the regressResult or interactionResult class |
getFC,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
getFC,regressResult-method |
Class to Contain the Regression Result |
getFCCutoff |
Access the significantFCCutoff slot from the regressResult or interactionResult class |
getFCCutoff,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
getFCCutoff,regressResult-method |
Class to Contain the Regression Result |
getFileName,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
getFileName,regressResult-method |
Class to Contain the Regression Result |
getFilterMethod |
Access the filterMethod slot from the regressResult or interactionResult class |
getFilterMethod,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
getFilterMethod,regressResult-method |
Class to Contain the Regression Result |
getID |
access the ID slot from the regressResult or interactionResult class |
getID,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
getID,regressResult-method |
Class to Contain the Regression Result |
getIndex |
Access the SignificantIndex slot from the regressResult or interactionResult class |
getIndex,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
getIndex,regressResult-method |
Class to Contain the Regression Result |
getInteraction |
Access the interaction slot from the contrastMatrix class |
getInteraction,contrastMatrix-method |
Class to Contain the Contrast Matrix that Used for Linear Regression |
getIntIndex |
Access the IntIndex slot from the designMatrix class |
getIntIndex,designMatrix-method |
Class to Contain the Design Matrix that Used for Linear Regression |
getLength |
Calculate the Length of interactionResult class |
getLength,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
getLevel |
Access the level slot from the contrastMatrix class |
getLevel,contrastMatrix-method |
Class to Contain the Contrast Matrix that Used for Linear Regression |
getNormalizationMethod |
Access the significantIndex slot from the regressResult or interactionResult class |
getNormalizationMethod,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
getNormalizationMethod,regressResult-method |
Class to Contain the Regression Result |
getP |
Access the pValue slot from regressResult or interactionResult class |
getP,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
getP,regressResult-method |
Class to Contain the Regression Result |
getPCutoff |
Access the significantPvalueCutoff slot from regressResult or interactionResult class |
getPCutoff,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
getPCutoff,regressResult-method |
Class to Contain the Regression Result |
getTarget |
Access the target slots from the designMatrix class |
getTarget,designMatrix-method |
Class to Contain the Design Matrix that Used for Linear Regression |
selectSigGene |
select differentially expressed genes from the regressResult class |
selectSigGene,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
selectSigGene,regressResult-method |
Class to Contain the Regression Result |
selectSigGeneInt |
select differentially expressed genes from the interactionResult class |
show,contrastMatrix-method |
Class to Contain the Contrast Matrix that Used for Linear Regression |
show,designMatrix-method |
Class to Contain the Design Matrix that Used for Linear Regression |
show,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
show,regressResult-method |
Class to Contain the Regression Result |
Sort |
Sort a regressionResult or an interactionResult |
Sort,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
Sort,regressResult-method |
Class to Contain the Regression Result |
summary,interactionResult-method |
Class to Contain the Regression Result Based on An Interaction Model |
summary,regressResult-method |
Class to Contain the Regression Result |