BCRANKmatch-class {BCRANK}R Documentation

Class "BCRANKmatch"

Description

Holds the bcrank score for one IUPAC consensus sequence. Several objects of this class are collected in a BCRANKsearch-class object

Objects from the Class

Objects are not intended to be created directly but as a result from running bcrank.

Slots

consensus:
consensus sequence in IUPAC coding
bcrankScore:
bcrank score for the consensus

Methods

consensus
signature(object = "BCRANKmatch"): Returns the consensus sequence.
bcrankScore
signature(object = "BCRANKmatch"): Returns the bcrank score.
matchVector
signature(object = "BCRANKmatch"): Returns a vector with 0's (no match) and 1's (match) of same length and order as the ranked DNA sequences.

Author(s)

Adam Ameur, adam.ameur@lcb.uu.se

See Also

bcrank, BCRANKsearch-class


[Package BCRANK version 1.4.1 Index]