fold {GeneRfold}R Documentation

Folding routine

Description

Folds the sequence and returns the minimum free energyin kcal/mol; the mfe structure in bracket notation is returned.

Usage

fold(s,t=37)

Arguments

s Sequence (character string)
t Temperature (double)

Value

a list with

Energy
Structure

References

http://www.tbi.univie.ac.at/~ivo/RNA/

See Also

dotPlot,rnaPlot

Examples

  s <- "TTAGCTCAATTGGTAAAGACCCTAGGCGAAGCTTAGAGGTCGCCGGTT"
  fold(s)
  dotPlot(s,file="dot.ps")
  rnaPlot(s,file="rna.ps")
  

[Package GeneRfold version 1.0.0 Index]