GTLoadExpression {GeneTraffic}R Documentation

Reads from a GeneTraffic project summary file

Description

A GeneTraffic project summary is read from a file representing the experiment interpretation for that project.

Usage

GTLoadExpression(filename = "Project.zip")

Arguments

filename Name of the file containing the GeneTraffic project summary in zip format.

Value

The return value depends on how many chip types the project summary file contains. If it has only one, it returns one ExpressionSet object, otherwise it returns a list of ExpressionSet objects (for 1 color projects). For two color projects, if it has only one chip type, it returns one marrayRaw object, otherwise it returns a list of marrayRaw objects.

Examples

    #From a file:
        eset <- GTLoadExpression(filename="Project.zip")
    eset

    #From a GeneTraffic server:
    ## Not run: 
        gt <- GTServer(host = "genetraffic", username="demo", password="pass", port = 80)
        session <- GTLogin(gt)
        pl <- GTGetProjectList(gt,session)
        filename <- GTGetProjectSummary(gt, session, pl[[1]]$"project_id")
        GTLogout(gt,session)
        eset <- GTLoadExpression(filename)
        eset
    
## End(Not run)

[Package GeneTraffic version 1.14.0 Index]