makeGeneModel {GenomeGraphs}R Documentation

Creates an object of class GeneModel

Description

Creates an object of class GeneModel representing a custom annotation or gene model

Usage

makeGeneModel(start, end, chromosome, dp = NULL)

Arguments

start Vector of start positions for exons
end Vector of end positions for exons
chromosome chromosome name
dp Display parametes represented as an object of class DisplayPars

Value

Object of class GeneModel

Author(s)

Steffen Durinck and Jim Bullard

References

~put references to the literature/web site here ~

See Also

DisplayPars

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--    or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (start, end, chromosome, dp = NULL) 
{
    if (is.null(dp)) 
        dp <- getClass("GeneModel")@prototype@dp
    new("GeneModel", exonStart = start, exonEnd = end, dp = dp)
  }

[Package GenomeGraphs version 1.2.3 Index]