TranscriptRegion-class {GenomeGraphs}R Documentation

Class "TranscriptRegion", representing a genomic region with transcripts

Description

Upon creation of this object, transcripts present in a specified region will be retrieved from Ensembl

Objects from the Class

Objects can be created by calls of the form new("TranscriptRegion", ...)

Slots

start:
Object of class "numeric", the start base of the genomic region
end:
Object of class "numeric", the end base of the genomic region
chromosome:
Object of class "character", the chromosome
size:
Object of class "numeric", the size of the plot for this object
biomart:
Object of class "Mart", contains link to Ensembl and should be created using the useMart function of the biomaRt package
ens:
Object of class "data.frame", users should not specify this, it contains the output of the query to Ensembl

Methods

show
signature(object = "TranscriptRegion"): ...

Author(s)

Steffen Durinck

References

http://www.stat.berkeley.edu/~steffen/

See Also

objects to See Also as gdPlot

Examples

showClass("TranscriptRegion")

[Package GenomeGraphs version 1.2.3 Index]