TranscriptRegion-class {GenomeGraphs} | R Documentation |
Upon creation of this object, transcripts present in a specified region will be retrieved from Ensembl
Objects can be created by calls of the form new("TranscriptRegion", ...)
start
:"numeric"
, the start base of the genomic regionend
:"numeric"
, the end base of the genomic region chromosome
:"character"
, the chromosomesize
:"numeric"
, the size of the plot for this objectbiomart
:"Mart"
, contains link to Ensembl and should be created using the useMart function of the biomaRt package ens
:"data.frame"
, users should not specify this, it contains the output of the query to Ensembl signature(object = "TranscriptRegion")
: ... Steffen Durinck
http://www.stat.berkeley.edu/~steffen/
objects to See Also as gdPlot
showClass("TranscriptRegion")