makeSegmentation {GenomeGraphs} | R Documentation |
Construct objects of class segmentation
makeSegmentation(start, end, value, dp = NULL)
start |
Either a list or a vector. If it is a list then it is a list of vectors of start position (this is the way it is represented in the segmentation class) If it is a vector it is a vector of start positions. |
end |
Same as start, but the corresponding end positions. |
value |
The y value of the segmentation, ie. segments(start[i], value[i], end[i], value[i]) |
dp |
The Display parameters. |
An object of class Segmentation
data("exampleData", package="GenomeGraphs") seg <- makeSegmentation(segStart, segEnd, segments, dp = DisplayPars(color = "black", lwd=2,lty = "solid")) cop <- makeGenericArray(intensity = cn, probeStart = probestart, segmentation = seg, dp = DisplayPars(size=3, color = "seagreen", type="dot")) gdPlot(cop)