makeExonArray {GenomeGraphs} | R Documentation |
Creates an object of class ExonArray, representing exon array microarray data
makeExonArray(intensity, probeStart, probeEnd, probeId, nProbes, displayProbesets = FALSE, dp = NULL)
intensity |
Matrix of intentsities, probes in the rows, samples in the columns |
probeStart |
Vector of probe start positions |
probeEnd |
Vector of probe end positions (optional) |
probeId |
Character vector containing the probe identifiers |
nProbes |
Vector indicating how many probes are in each probeset |
displayProbesets |
Logical indicating if the probeset idenifier should be displayed or not |
dp |
Object of class DisplayPars to set the display parameters |
Object of ExonArray class
Steffen Durinck and Jim Bullard
~put references to the literature/web site here ~
##---- Should be DIRECTLY executable !! ---- ##-- ==> Define data, use random, ##-- or do help(data=index) for the standard data sets. ## The function is currently defined as function (intensity, probeStart, probeEnd, probeId, nProbes, displayProbesets = FALSE, dp = NULL) { pt <- getClass("ExonArray")@prototype if (is.null(dp)) dp <- pt@dp if (missing(probeEnd)) probeEnd <- pt@probeEnd if (missing(probeId)) probeId <- pt@probeId if (missing(nProbes)) nProbes <- pt@nProbes if (is.null(dp)) dp <- getClass("ExonArray")@prototype@dp new("ExonArray", intensity = intensity, probeStart = probeStart, probeEnd = probeEnd, probeId = probeId, nProbes = nProbes, displayProbesets = displayProbesets, dp = dp) }