base.stacking.thermodynamics {HELP} | R Documentation |
Unified thermodynamic parameters (delta-S and delta-H values) for nearest-neighbor base stacking calculations
data(base.stacking.thermodynamics)
A matrix with 2 columns and 16 rows. Column 1 indicates enthalpic parameters (dH) and column 2 indicates entropic parameters (dS). Rows indicate all possible 2bp combinations of "A", "T", "C", and "G" (e.g. "AC")
Allawi, H.T. and SantaLucia, J., Jr. (1997) Thermodynamics and NMR of internal G.T mismatches in DNA, Biochemistry, 36, 10581-10594.
data(base.stacking.thermodynamics)