fromSnpToQuartet {ITALICS} | R Documentation |
This function put the smoothing value of each SNP in front of its corresponding quartet in the quartetInfo data.frame.
fromSnpToQuartet(quartetInfo, profilSNP)
quartetInfo |
a data frame containing all the quartet values plus there GC content, fragment length and GC content and Quartet effect |
profilSNP |
a data frame, corresponding to the profileValues argument of a profilCGH object (see GLAD) |
return the data.frame quartetInfo with an additionnal column: "Smoothing" corresponding to the estimated smoothing value.
People interested in tools dealing with array CGH analysis and DNA copy number analysis can visit our web-page http://bioinfo.curie.fr.
Guillem Rigaill, italics@curie.fr.
Institut Curie, italics@curie.fr.