getQuartet {ITALICS}R Documentation

Function to retrieve the information of each quartet

Description

This function retrieve information of each quartet. This function use the pd.mapping50k.xba240, pd.mapping50k.hind240, pd.mapping250k.sty and pd.mapping250k.nsp package.

Usage

  getQuartet(pkgname, snpInfo)

Arguments

pkgname the chip type pd.mapping50k.xba240, pd.mapping50k.hind240, pd.mapping250k.sty or pd.mapping250k.nsp
snpInfo a data frame containing SNPs position along the genome

Value

return a list with two fields. fid : containing the position of each quartet on the CEL file. quartetInfo : a data fame containing the columns : fsetid, fid, FL (fragment length) and GC (content of the quartet)

Note

People interested in tools dealing with array CGH analysis and DNA copy number analysis can visit our web-page http://bioinfo.curie.fr.

Author(s)

Guillem Rigaill, italics@curie.fr.

Source

Institut Curie, italics@curie.fr.


[Package ITALICS version 2.2.0 Index]