analyseCGH {ITALICS}R Documentation

GLAD analysis

Description

Glad Analysis ot the genomic profile

Usage

analyseCGH(data, amplicon, deletion, deltaN, forceGL, param, nbsigma, ...)

Arguments

data A data frame containing SNP's intensity, chromosome and position on the genome. data must have a Chr, X and LogRatio columns
amplicon see the amplicon parameter in the daglad function
deletion see the deletion parameter in the daglad function
deltaN see the deltaN parameter in the daglad function
forceGL see the forceGL parameter in the daglad function
param see the param parameter in the daglad function
nbsigma see the nbsigma parameter in the daglad function
... Other daglad parameters.

Value

An object of class profileCGH.

Note

People interested in tools dealing with array CGH analysis and DNA copy number analysis can visit our web-page http://bioinfo.curie.fr.

Author(s)

Guillem Rigaill, italics@curie.fr.

Source

Institut Curie, italics@curie.fr.

See Also

getModel


[Package ITALICS version 2.2.0 Index]