bget {KEGGSOAP}R Documentation

Client-side interface to obtain KEGG database entries by a list of entry identifiers

Description

bget is used for retrieving KEGG database entries specified by a list of entry identifiers. It accepts all the KEGG bget commond line options as a character string. Number of entries retrieved at a time is restricted up to 100.

Usage

bget(bget.command)

Arguments

bget.command bget.command a character string of KEGG bget command

Value

a character string of KEGG bget search result.

Author(s)

Nianhua Li

References

http://www.genome.jp/kegg/docs/keggapi_manual.html#label:40

Examples

        # retrieve two KEGG/GENES entries
        bget("eco:b0002 hin:tRNA-Cys-1")
        # retrieve nucleic acid sequences in a FASTA format
        bget("-f -n n eco:b0002 hin:tRNA-Cys-1")
        # retrieve amino acid sequence in a FASTA format
        bget("-f -n a eco:b0002")

[Package KEGGSOAP version 1.16.0 Index]