adjBaseOlig.error |
Evaluates LPE variance function of M for quantiles of A within and experimental condition and then interpolates it for all genes. |
adjBaseOlig.error.step1 |
Evaluates LPE variance function of M for quantiles of A within and experimental condition by divinding the A in 100 intervals. |
adjBaseOlig.error.step2 |
Evaluates LPE variance function of M for quantiles of A within and experimental condition. It is based on the adaptive number of intervals. |
calculateLpeAdj |
Evaluates local pooled error significance test with user chosen variance adjustments. |
getCols |
Get number of replicates from character vector |
lpeAdj |
High level lpeAdj function that executes the adjusted local pooled error significance test. If more control over parameters is needed then see documentation for calculateLpeAdj. |