Modelling Experimental Data from MeDIP Enrichment


[Package List] [Top]

Documentation for package ‘MEDME’ version 1.2.1

User Guides and Package Vignettes

Read overview or browse directory.

Help Pages

AMS Class "MEDMEset"
AMS,MEDMEset-method Class "MEDMEset"
CG Class "MEDMEset"
CG,MEDMEset-method Class "MEDMEset"
CGcount Determining the count of CpG dinucleotides for a set of genomic locations
CGcounts Class "MEDMEset"
chr Class "MEDMEset"
chr,MEDMEset-method Class "MEDMEset"
initialize,MEDMEset-method Class "MEDMEset"
logR Class "MEDMEset"
logR,MEDMEset-method Class "MEDMEset"
MEDME Determining the logistic model of MeDIP enrichment in respect to the expected DNA methylation level
MEDME.readFiles reading sgr or gff files for MEDME
MEDME.writeFiles writeFiles sgr or gff files from MEDME output
MEDMEset-class Class "MEDMEset"
org Class "MEDMEset"
org,MEDMEset-method Class "MEDMEset"
organism Class "MEDMEset"
pos Class "MEDMEset"
pos,MEDMEset-method Class "MEDMEset"
predict Applying the logistic model on MeDIP enrichment data
RMS Class "MEDMEset"
RMS,MEDMEset-method Class "MEDMEset"
show,MEDMEset-method Class "MEDMEset"
smooth Determining weighted MeDIP data
smoothed Class "MEDMEset"
smoothed,MEDMEset-method Class "MEDMEset"
testMEDMEset Dataset of class MEDMEset for testing MEDME
[,MEDMEset,ANY,ANY,ANY-method Class "MEDMEset"