mxy.abs.plot {OLIN} | R Documentation |
This function produce a MXY plot of absolute values of M including a colour bar.
mxy.abs.plot(V,Ngc,Ngr,Nsc,Nsr,color.lim,color="red",xlab="Columns",ylab="Rows",...)
V |
vector of positive values |
Ngc |
number of columns for the grid matrix |
Ngr |
number of rows for the grid matrix |
Nsc |
number of columns for the spot matrix |
Nsr |
number of rows for the spot matrix |
color.lim |
limits of color range for MXY plot |
color |
color to be used for plot: “red” (default) or “green” |
xlab |
label of x -axis of MXY plot |
ylab |
label of y-axis of MXY plot |
... |
Further optional graphical parameter for the image function generating the MXY plot |
The function mxy.abs.plot
is similar to function mxy.plot
. Details can therefore
be found at mxy.plot
. Two differences, however, exist: First, mxy.abs.plot
plots the absolute value of V and second, “red” (default) or “green” can be chosen
as colour of plotting. Hence, mxy.abs.plot
facilitates the inspection of
spatial artifacts in single fluorescence channels.
Matthias E. Futschik (http://itb.biologie.hu-berlin.de/~futschik)
v2m
, m2v
, colorbar.mxy.abs
, fgbg.visu
, image
# LOADING DATA data(sw) # PLOTTING OF ABSOLUTE LOGGED FOLD-CHANGES mxy.plot(abs(maM(sw)[,1]),Ngc=maNgc(sw),Ngr=maNgr(sw),Nsc=maNsc(sw),Nsr=maNsr(sw)) # PLOTTING SPATIAL DISTRIBUTION OF SINGLE-CHANNEL INTENSITIES mxy.abs.plot(maRf(sw)[,1],color.lim=c(0,10000),Ngc=maNgc(sw),Ngr=maNgr(sw), Nsc=maNsc(sw),Nsr=maNsr(sw)) mxy.abs.plot(maGf(sw)[,1],color.lim=c(0,10000),color="green",Ngc=maNgc(sw),Ngr=maNgr(sw), Nsc=maNsc(sw),Nsr=maNsr(sw))