KEGG2SCISI {PCpheno} | R Documentation |
Count the number of genes shared between a KEGG pathway and a protein complex from the ScISI interactome.
KEGG2SCISI(pw, pc, pcMat, pwMat)
pw |
list of pathway names |
pc |
list of complex names |
pwMat |
pathway incidence matrix |
pcMat |
complex incidence matrix |
matrix
N. LeMeur
ScISI KEGG
data(ScISIC) ## Mapping from Yeast genes to KEGG pathways. KeggMat <- PWAmat("org.Sc.sgd") KEGG2SCISI(pw = colnames(KeggMat)[1:5], pc = colnames(ScISIC)[1:5], pwMat = KeggMat, pcMat =ScISIC)