Ciphergen SELDI-TOF Processing


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Documentation for package ‘PROcess’ version 1.18.0

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align Align peaks for a specified precision.
avesd Compute the Average Standard Deviation for a Set of Spectra and a Given Cutoff Point
aveSpec Compute mean spectrum of a set of spectra
binning Binning the Mass Spectrometry Data
bslnoff Baseline Substraction
gelmap Plot the image of a set of spectra
getMzs Extract M/Z values from the biomarker dataframe.
getPeaks Peak Detection
getPeaks2 Quantify peaks for individual spectra.
intg Integration
is.multiple Find multiple-charged polypeptides.
isPeak Locate Peaks in a Spectrum
lnn Estimate Signal and Variation of a Spectrum
noise Peak Detection
peaks Peak Detection
pk2bmkr Find Biomarkers.
quality Quality Check on a Set of Spectra
read.files Read a Spectrum from a Comma Deliminated File
renorm Renormalize Spectra
rmBaseline Batch Baseline Subtraction.
sigma Peak Detection
specZoom Plotting a Spectrum with Peaks