makeBoxplotPerPlate {RNAither} | R Documentation |
Generates a boxplot of intensity values per plate for each experiment available in the dataset.
makeBoxplotPerPlate(header, dataset, channel, plotTitle, plotDesign, showPlot)
header |
the header of a dataset file generated with generateDatasetFile |
dataset |
an R data frame generated with generateDatasetFile |
channel |
a character string specifying the column whose values will be used for the boxplot |
plotTitle |
the plot title |
plotDesign |
1 or 2. 1 will generate one window containing all plots, 2 will generate a series of plots. |
showPlot |
0 or 1. 1 will open one or several plot windows in the R GUI, 0 will only save the plot(s) without opening windows. |
For each experiment, a boxplot of intensity values per plate will be saved as a pdf and a png file named after the experiment name specified in the header concatenated with the plotTitle
.
The function returns a list containing:
plotName |
the plotname |
minOfScreens |
the number of the first experiment |
numOfScreens |
the number of the last experiment |
makeBoxplotControls
, makeBoxplotControlsPerPlate
, makeBoxplotControlsPerScreen
, makeBoxplotPerScreen
data(exampleHeader, package="RNAither") data(exampleDataset, package="RNAither") makeBoxplotPerPlate(header, dataset, "SigIntensity", "Data vs. Controls", 1, 1)