plotQQperplate {RNAither} | R Documentation |
Make a QQ plot per plate
Description
Shows and saves a QQ plot of the data for each experiment and each plate in the dataset.
Usage
plotQQperplate(header, dataset, channel, plotTitle, plotDesign, showPlot)
Arguments
header |
the header of a dataset file generated with generateDatasetFile |
dataset |
an R data frame generated with generateDatasetFile |
channel |
a character string specifying the name of the column containing the values to be plotted, e.g. "SigIntensity" |
plotTitle |
the plot title |
plotDesign |
1 or 2. 1 will generate one window containing all plots, 2 will generate a series of plots. |
showPlot |
0 or 1. 1 will open one or several plot windows in the R GUI, 0 will only save the plot(s) without opening windows. |
Value
Saves the QQ plots in a pdf and a png file named after the experiment name specified in the header concatenated with the plotTitle
.
The function returns a list containing:
histoName |
the plotname |
c(minOfScreens, numOfScreens) |
a vector with the number of the first experiment and of the last experiment |
c(minOfPlates, numOfPlates) |
a vector with the number of the first plate and the number of the last plate |
See Also
plotQQ
, plotQQperscreen
Examples
data(exampleHeader, package="RNAither")
data(exampleDataset, package="RNAither")
plotQQperplate(header, dataset, "SigIntensity", "QQplot", 1, 1)
[Package
RNAither version 1.4.6
Index]