compareReplicaPlates {RNAither} | R Documentation |
Generates plots comparing the same plates in different experiments pairwise.
compareReplicaPlates(header, dataset, plotTitle, col4val, showPlot)
header |
the header of a dataset file generated with generateDatasetFile |
dataset |
an R data frame generated with generateDatasetFile |
plotTitle |
the plot title |
col4val |
a character string specifying the column whose values will be used for the plot |
showPlot |
0 or 1. 1 will open one or several plot windows in the R GUI, 0 will only save the plot(s) without opening windows |
For each plate, plots of pairwise comparisons between replicate intensities are generated and saved as a pdf file named after the experiment name specified in the header concatenated with the plotTitle
.
data(exampleHeader, package="RNAither") data(exampleDataset, package="RNAither") compareReplicaPlates(header, dataset, "Comparison of replica plate", "SigIntensity", 1)