trim {RNAither}R Documentation

Compute the replicate mean with trimmed values

Description

Computes the mean of replicate values, omitting the highest and the lowest 5

Usage

trim(Ivec, na.rm = T)

Arguments

Ivec All channel values for a specific siRNA/gene
na.rm Removes NA values

Value

A double giving the trimmed mean of the given replicate values, i.e. omitting the highest and the lowest 5

See Also

rms, closestToZero, furthestFromZero, summarizeReps, summarizeRepsNoFiltering

Examples

data(exampleHeader, package="RNAither")
data(exampleDataset, package="RNAither")

Indexes <- findReplicates(dataset, "GeneName", "CPSF1")
replicatemean <- trim(dataset$SigIntensity[Indexes])

[Package RNAither version 1.4.6 Index]