compareHits {RNAither} | R Documentation |
Searches for common hits between different scoring methods.
compareHits(hitVec1, hitVec2, namesHitVec1, namesHitVec2)
hitVec1, hitVec2 |
the two binary hit vectors to be compared |
namesHitVec1, namesHitVec2 |
the names of the siRNAs corresponding to the hit vectors |
Returns a character vector indicating which siRNAs are identified as hits in two different hit scoring schemes.
data(scoredDataset1, package="RNAither") data(pValVec1, package="RNAither") data(scoredDataset2, package="RNAither") data(pValVec2, package="RNAither") ##for details on the generation of pValVec and scoredDataset, ##see the examples of the functions Ttest and MannWhitney linked above. scoredHits1 <- hitselectionPval(scoredDataset1, pValVec1, "SigIntensity", "Hits1", 0.05, "GeneName", "pvalue_testfile1.txt") scoredHits2 <- hitselectionPval(scoredDataset2, pValVec2, "SigIntensity", "Hits2", 0.05, "GeneName", "pvalue_testfile2.txt") hitVector1 <- scoredHits1[[2]] hitVector2 <- scoredHits2[[2]] common_hits <- compareHits(hitVector1, hitVector2, names(hitVector1), names(hitVector2))