interactionEntry-class {Rintact} | R Documentation |
A class representing the interaction data extracted from an IntAct data file in PSI-MI 2.5 format.
Objects are usually created by psi25interaction
.
releaseDate
:entry
element of the XML file.organismName
:taxId
:interactors
:interactiones
:intactInteraction
objects,
each represents one interaction.signature(object = "interactionEntry")
: a print methodsignature(object = "interactionEntry")
: a method to find all the
baits within the interactionEntry and print themsignature(object = "interactionEntry")
: a method to find all the
prey within the interactionEntry and print themsignature(object = "interactionEntry")
: a method to find
all the interactions within the interactionEntry and print themsignature(object = "interactionEntry")
: a method to find
all the interactors within the interactionEntry and print themsignature(object = "interactionEntry")
: a method to print
all the unique organism names that are of the interactorssignature(object = "interactionEntry")
: a method to print
each taxonomy id for each organismsignature(object = "interactionEntry")
: a method to print
the updated release date of the PSI-MI 2.5 XML file; it serves as a proxy for versioning.Nianhua Li
The IntAct Database: http://www.ebi.ac.uk/intact/site/contents/downloads.jsf.
intactInteraction-class
, psi25interaction