translateIntactID {Rintact} | R Documentation |
The translateIntactID
takes 3 parameters, either an intactGraph
or intactHyperGraph S-4 Class, a vector of IntAct accession codes, and
a vector of other identifiers. Then for the particular graph object,
translateIntactID will map those IntAct accession codes to the other
identifiers if possible.
translateIntactID(r,...)
r |
Either an intactGraph or intactHyperGraph S-4 Class. |
... |
The primary use of this generic are as methods for the in intactGraph S-4 class and the intactHyperGraph S-4 class. In both two more parameters need for the method. The first is "ebiNames" which is a character vector of the IntAct accession codes to be mapped. The second is "toWhat" which is a character vector of identifier names. These identifiers are limited to the following: "uniprotId", "geneName", "fullName", "locusName", and "orfName" |
A character matrix. The rows are indexed by the IntAct accession codes supplied and the columns are indexed by the identifiers supplied.
T Chiang
Rintact: enabling computational analysis of molecular interaction data from the IntAct repository - Tony Chiang; Nianhua Li; Sandra Orchard; Samuel Kerrien; Henning Hermjakob; Robert Gentleman; Wolfgang Huber Bioinformatics 2007; doi: 10.1093/bioinformatics/btm518.
intactGraph-class
, intactHyperGraph-class
# parse complex data