psimi25Hypergraph-class {RpsiXML} | R Documentation |
Class to present PSI-MI 2.5 XML data as hypergraph.
Objects can be created by calls of the form psimi25XML2Graph
interactors
:"matrix"
, Object of class "matrix"
,
interactor information in a matrix, Each row represents one
interactor. Source IDs are used as row names. Each column represents one annotation.
Annotations include: UniProt ID, short label, organism name, and NCBI taxonomy ID. Only those interactors which are
the nodes of the psimi25Graph is given.
Class Hypergraph
, directly.
signature(.Object = "psimi25Hypergraph")
signature(object = "psimi25Hypergraph")
: show method signature(r = "psimi25Hypergraph")
:
translate source ID into other IDs Tony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang <j.zhang@dkfz.de>
psimi25XML2Graph
,S4classpsimi25Graph-class
showClass("psimi25Hypergraph")