psimi25Interaction-class {RpsiXML} | R Documentation |
A class representing interaction data
Objects can be created by calls of the form parsePsimi25Interaction
sourceDb
:"character"
, source databasesourceId
:"character"
, source
database IDinteractionType
:"character"
,
character, the method used for detecting the interaction ,such as
"pull down"expPubMed
:"character"
, PubMed
ID of the publication that describes the experimentexpSourceId
:"character"
,
source database ID of the experimentconfidenceValue
:"character"
,
confidence value of the experimental interactionparticipant
:"character"
,
UniProt IDs of the participants. Important when no bait/prey
information is availablebait
:"character"
, UniProt ID
of the bait prey
:"character"
, UniProt
ID(s) of the prey(s)inhibitor
:"character"
, UniProt
ID of the inhibitor, NA when missingneutralComponent
:"character"
,
UniProt ID of the neutral components, NA when missingsignature(x = "psimi25Interaction")
:
finds out interaction type signature(object = "psimi25Interaction")
: a print
methodsignature(x = "psimi25Interaction")
: finds
out source databasesignature(x = "psimi25Interaction")
: returns
ID of the source database signature(x = "psimi25Interaction")
: returns the
UniProt ID of the baitsignature(x = "psimi25Interaction")
: returns the
UniProt ID(s) of the prey(s)Tony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang <j.zhang@dkfz.de>
parsePsimi25Interaction
,S4CLASSpsimi25Interactor-class
,
S4CLASSpsimi25Experiment-class
, S4classpsimi25InteractionEntry-class
showClass("psimi25Interaction")