interactorInfo {RpsiXML} | R Documentation |
The function returns the essential information of interactors in a matrix. Xrefs are left out since they have arbitrary numbers of annotation and cannot be summarized into a matrix.
interactorInfo(x)
x |
An object which contains psimi25Interactor information, for
example objects of psimi25InteractionEntry-class ,
psimi25Graph-class , psimi25Hypergraph-class or psimi25ComplexEntry-class
|
.
A matrix of interactor information, each row represents an interactor The columns are
sourceDb |
source database |
sourceId |
source database index |
shortLabel |
short label assigned by the source database |
uniprotId |
UniProt ID, NA if not available |
organismName |
the organism of the interactor protein |
Jitao David Zhang <j.zhang@dkfz.de>
xmlDir <- system.file("/extdata/psi25files",package="RpsiXML") hprdxml <- file.path(xmlDir, "hprd_200709_test.xml") hprdSet <- parsePsimi25Interaction(hprdxml, HPRD.PSIMI25) hprdInteractorInfo <- interactorInfo(hprdSet)