psimi25InteractionEntry-class {RpsiXML} | R Documentation |
A class representing interaction data parsed from PSI-MI 2.5 XML files
Objects can be created by calls of the form parsePsimi25Interaction
organismName
:"character"
, the unique organism name(s) of the interactors taxId
:"character"
, the unique
NCBI taxonomy ID(s) of the interactors releaseDate
:"character"
, character, release date of the data entry,
recorded in the entry
element of the XML fileinteractors
:"matrix"
, interactor information in a matrix, Each row represents one
interactor. Source IDs are used as row names. Each column represents one annotation.
Annotations include: UniProt ID, short label, organism name, and NCBI taxonomy ID interactions
:"list"
, list, a list of psimi25Interaction-class
objects,
each represents one interaction. signature(x = "psimi25InteractionEntry")
:
return a list of psimi25Intearaction
objects, each
representing one interactionsignature(x = "psimi25InteractionEntry")
: a method to find
all the interactors within the psimi25InteractionEntry and print them signature(x = "psimi25InteractionEntry")
:
returns organism names of the interactors signature(x = "psimi25InteractionEntry")
:
returns the release date, serving as a proxy for versioning signature(object = "psimi25InteractionEntry")
: a
print methodsignature(x = "psimi25InteractionEntry")
:
returns NCBI taxonomy ID Tony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang <j.zhang@dkfz.de>
parsePsimi25Interaction
, S4classpsimi25Interaction-class
showClass("psimi25InteractionEntry")