interactorInfo {RpsiXML}R Documentation

Interactor info in a matrix

Description

The function returns the essential information of interactors in a matrix. Xrefs are left out since they have arbitrary numbers of annotation and cannot be summarized into a matrix.

Usage

interactorInfo(x)

Arguments

x An object which contains psimi25Interactor information, for example objects of psimi25InteractionEntry-class, psimi25Graph-class, psimi25Hypergraph-class or psimi25ComplexEntry-class

.

Value

A matrix of interactor information, each row represents an interactor The columns are

sourceDb source database
sourceId source database index
shortLabel short label assigned by the source database
uniprotId UniProt ID, NA if not available
organismName the organism of the interactor protein

Author(s)

Jitao David Zhang <j.zhang@dkfz.de>

See Also

xref, availableXrefs

Examples

xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")

hprdxml <- file.path(xmlDir, "hprd_200709_test.xml")
hprdSet <- parsePsimi25Interaction(hprdxml, HPRD.PSIMI25)

hprdInteractorInfo <- interactorInfo(hprdSet)

[Package RpsiXML version 1.0.0 Index]