psimi25Hypergraph-class {RpsiXML}R Documentation

Class "psimi25Hypergraph"

Description

Class to present PSI-MI 2.5 XML data as hypergraph.

Objects from the Class

Objects can be created by calls of the form psimi25XML2Graph

Slots

interactors:
Object of class "matrix", Object of class "matrix", interactor information in a matrix, Each row represents one interactor. Source IDs are used as row names. Each column represents one annotation. Annotations include: UniProt ID, short label, organism name, and NCBI taxonomy ID. Only those interactors which are the nodes of the psimi25Graph is given.

Extends

Class Hypergraph, directly.

Methods

initialize
signature(.Object = "psimi25Hypergraph")
show
signature(object = "psimi25Hypergraph"): show method
translateSourceID
signature(r = "psimi25Hypergraph"): translate source ID into other IDs

Author(s)

Tony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang <j.zhang@dkfz.de>

See Also

psimi25XML2Graph,S4classpsimi25Graph-class

Examples

showClass("psimi25Hypergraph")

[Package RpsiXML version 1.0.0 Index]