psimi25Interaction-class {RpsiXML}R Documentation

Class "psimi25Interaction"

Description

A class representing interaction data

Objects from the Class

Objects can be created by calls of the form parsePsimi25Interaction

Slots

sourceDb:
Object of class "character", source database
sourceId:
Object of class "character", source database ID
interactionType:
Object of class "character", character, the method used for detecting the interaction ,such as "pull down"
expPubMed:
Object of class "character", PubMed ID of the publication that describes the experiment
expSourceId:
Object of class "character", source database ID of the experiment
confidenceValue:
Object of class "character", confidence value of the experimental interaction
participant:
Object of class "character", UniProt IDs of the participants. Important when no bait/prey information is available
bait:
Object of class "character", UniProt ID of the bait
prey:
Object of class "character", UniProt ID(s) of the prey(s)
inhibitor:
Object of class "character", UniProt ID of the inhibitor, NA when missing
neutralComponent:
Object of class "character", UniProt ID of the neutral components, NA when missing

Methods

interactionType
signature(x = "psimi25Interaction"): finds out interaction type
show
signature(object = "psimi25Interaction"): a print method
sourceDb
signature(x = "psimi25Interaction"): finds out source database
sourceId
signature(x = "psimi25Interaction"): returns ID of the source database
bait
signature(x = "psimi25Interaction"): returns the UniProt ID of the bait
prey
signature(x = "psimi25Interaction"): returns the UniProt ID(s) of the prey(s)

Author(s)

Tony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang <j.zhang@dkfz.de>

See Also

parsePsimi25Interaction,S4CLASSpsimi25Interactor-class, S4CLASSpsimi25Experiment-class, S4classpsimi25InteractionEntry-class

Examples

showClass("psimi25Interaction")

[Package RpsiXML version 1.0.0 Index]