quantsmooth.heatmap {SIM}R Documentation

Function to plot smoothed copy number data along side association heatmap

Description

Internal function for the SIM package used by heatmap_with_plot, which in turn is used by sim.plot.zscore.heatmap.

Usage

quantsmooth.heatmap(input.region, dep.data, lambda, run.name)

Arguments

input.region Describe input.region here
dep.data Describe dep.data here
lambda Describe lambda here
run.name Describe run.name here

Details

See the help in the main function sim.plot.zscore.heatmap.

Value

Describe the value returned If it is a LIST, use

comp1 Description of 'comp1'
comp2 Description of 'comp2'

Warning

....

Note

further notes

Make other sections like Warning with section{Warning }{....}

Author(s)

Marten Boetzer, Renee X. de Menezes R.X.Menezes@lumc.nl

References

Jan Oosting, Paul Eilers and Renee Menezes (2006). quantsmooth: Quantile smoothing and genomic visualization of array data. R package version 1.2.0.

See Also

heatmap.with.plot,sim.plot.zscore.heatmap,quantsmooth

Examples

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[Package SIM version 1.10.0 Index]