SIM-package | Statistical Integration of Microarrays |
acgh.data | Array-comparative genomic hybridization data example |
assemble.data | Assemble the data to run the integrated analysis |
chrom.table | Table with chromosome arm positions |
expr.data | Expression data example |
impute.nas.by.surrounding | Impute NA's in array-CGH data |
integrated.analysis | Integrated analysis of expression and copy number microarray data |
link.metadata | Link a metadata annotation file to expression ID |
RESOURCERER.annotation.to.ID | Link RESOURCERER annotation file to expression ID |
samples | Samples for example data |
SIM | Statistical Integration of Microarrays |
sim.plot.pvals.on.genome | Plot the p-values in whole genome overview |
sim.plot.pvals.on.region | P-value histograms and p-values along the genome per region |
sim.plot.zscore.heatmap | Association heatmap from z-scores |
tabulate.pvals | Sums significant p-values for the analyzed regions |
tabulate.top.dep.features | Lists the p-values for the dependent features |
tabulate.top.indep.features | Lists the mean z-scores for the independent features |