make.Normal.data {SIM}R Documentation

Function to generate normal data for CLAC

Description

This function is used when the the copy number data should be represented in a CLAC plot, while there are no normal samples in the copy number data. The (tumor) samples are divided into three parts, the probe medians are taken for each group, thereby generating three fake normal samples. Can give distortions of real copy number when aberrations occur in more than half of the samples.

Usage

make.Normal.data(data)

Arguments

data Describe data here

Details

If necessary, more details than the description above

Value

Describe the value returned If it is a LIST, use

comp1 Description of 'comp1'
comp2 Description of 'comp2'

Warning

....

Note

further notes

Make other sections like Warning with section{Warning }{....}

Author(s)

Marten Boetzer, Renee X. de Menezes R.X.Menezes@lumc.nl

References

put references to the literature/web site here

See Also

heatmap.with.clac.plot

Examples

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[Package SIM version 1.10.0 Index]