acgh.heatmap.with.heatmap {SIM}R Documentation

Function to plot the copy number data as heatmap along side the association heatmap

Description

Internal function for the SIM package that plots the association heatmap with a left panel representing the log-ratios of the copy number data per sample in a color scale (red is loss, green is gain). This function is used by heatmap.with.plot, which in turn is used by sim.plot.zscore.heatmap.

Usage

acgh.heatmap.with.heatmap(subtype, input.region, scale.heatmap, run.name)

Arguments

subtype Describe subtype here
input.region Describe input.region here
scale.heatmap Describe scale.heatmap here
run.name Describe run.name here

Details

See the help in the main function sim.plot.zscore.heatmap.

Value

Describe the value returned If it is a LIST, use

comp1 Description of 'comp1'
comp2 Description of 'comp2'

Warning

....

Note

further notes

Make other sections like Warning with section{Warning }{....}

Author(s)

Marten Boetzer, Renee X. de Menezes R.X.Menezes@lumc.nl

References

put references to the literature/web site here

See Also

sim.plot.zscore.heatmap,heatmap.with.plot

Examples

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[Package SIM version 1.10.0 Index]