heatmap.with.plot {SIM} | R Documentation |
Internal function for the SIM package used in the function sim.plot.zscore.heatmap
.
heatmap.with.plot(dep.data, input.region = input.region, plot.method = plot.method, Normal.data = Normal.data, subtype = subtype, acgh.heatmap.scale = acgh.heatmap.scale, run.name = run.name, lambda = lambda, windowsize = windowsize, x = x, Rowv = NULL, Colv = if (symm) "Rowv" else NULL, distfun = dist, hclustfun = hclust, reorderfun = function(d, w) reorder(d, w), add.expr, symm = FALSE, revC = identical(Colv, "Rowv"), scale = c("row", "column", "none"), na.rm = TRUE, margins = c(5, 5), ColSideColors, RowSideColors, cexRow = 0.2 + 1/log10(nr), cexCol = 0.2 + 1/log10(nc), labRow = NULL, labCol = NULL, main = NULL, xlab = NULL, ylab = NULL, keep.dendro = FALSE, verbose = getOption("verbose"), ...)
dep.data |
Describe dep.data here |
input.region |
Describe input.region here |
plot.method |
Describe plot.method here |
Normal.data |
Describe Normal.data here |
subtype |
Describe subtype here |
acgh.heatmap.scale |
Describe acgh.heatmap.scale here |
run.name |
Describe run.name here |
lambda |
Describe lambda here |
windowsize |
Describe windowsize here |
x |
Describe x here |
Rowv |
Describe Rowv here |
Colv |
Describe Colv here |
distfun |
Describe distfun here |
hclustfun |
Describe hclustfun here |
reorderfun |
Describe reorderfun here |
add.expr |
Describe add.expr here |
symm |
Describe symm here |
revC |
Describe revC here |
scale |
Describe scale here |
na.rm |
Describe na.rm here |
margins |
Describe margins here |
ColSideColors |
Describe ColSideColors here |
RowSideColors |
Describe RowSideColors here |
cexRow |
Describe cexRow here |
cexCol |
Describe cexCol here |
labRow |
Describe labRow here |
labCol |
Describe labCol here |
main |
Describe main here |
xlab |
Describe xlab here |
ylab |
Describe ylab here |
keep.dendro |
Describe keep.dendro here |
verbose |
Describe verbose here |
... |
Describe ... here |
If necessary, more details than the description above
Describe the value returned If it is a LIST, use
comp1 |
Description of 'comp1' |
comp2 |
Description of 'comp2' |
....
further notes
Make other sections like Warning with section{Warning }{....}
Marten Boetzer, Renee X. de Menezes R.X.Menezes@lumc.nl
put references to the literature/web site here
objects to See Also as sim.plot.zscore.heatmap
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