heatmap.with.clac.plot {SIM}R Documentation

heatmap.with.clac.plot

Description

Internal function for the SIM package used by the sim.plot.zscore.heatmap when run with plot.method = "clac".

Usage

heatmap.with.clac.plot(input.region, dep.data, Normal.data, windowsize = windowsize, run.name)

Arguments

input.region Describe input.region here
dep.data Describe dep.data here
Normal.data Describe Normal.data here
windowsize Describe windowsize here
run.name Describe run.name here

Details

We used code from the clac package to implement this function.

Value

Describe the value returned If it is a LIST, use

comp1 Description of 'comp1'
comp2 Description of 'comp2'

Warning

....

Note

further notes

Make other sections like Warning with section{Warning }{....}

Author(s)

Marten Boetzer, Renee X. de Menezes R.X.Menezes@lumc.nl

References

Pei Wang and with contributions from Balasubramanian Narasimhan. (2004). clac: Clust Along Chromosomes, a method to call gains/losses in CGH array data. R package version 0.1-2.

See Also

objects to See Also as help,

Examples

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[Package SIM version 1.10.0 Index]