compare {SLGI} | R Documentation |
This method summarizes the result of the modelSLGI
function.
## S4 method for signature 'siResult': compare(x)
x |
a siResult object to summarize |
This compares the number of observed interactions to the number of expected interactions in each permutation model. It counts how many times the number of observed interactions is greater than the number of expected interactions (from the permutations) and divides by the number of permutations applied.
Numerical vector
N. LeMeur
modelSLGI
data(ScISIC) data(Atong) data(SGA) model <- modelSLGI(Atong, universe= SGA, interactome=ScISIC, type="intM", perm=2) ans <- compare(model)