AtongFnDomain {SLGI} | R Documentation |
The functional domains shared by the tested pairs in Tong et al experiment.
Description
Data developed from Tong et. al. buffering experiments.
Usage
data(AtongFnDomain)
Format
A list containing 3 items.
pairsDataframe of all the gene pairs and their synthetic
lethality status.
SharedPfamList of the Pfam domains shared by each pair.
The order of this list is the same as the order of the pairs.
SharedSMARTList of the SMART domains shared by each pair.
The order of this list is also the same as the order of the pairs.
Author(s)
Z. Jiang
Source
Created from the association matrix reported by Tong et al. and the
Pfam (Protein family database http://pfam.janelia.org/) and SMART database of yeast.
References
Global Mapping of the Yeast Genetic Interaction Network, Tong et al,
Science Vol.303, 2004
Saccharomyces Genome Database
Examples
data(AtongFnDomain)
names(AtongFnDomain)
[Package
SLGI version 1.2.0
Index]