siResult-class {SLGI}R Documentation

A class for representing the result of the SLGI graph permutation model.

Description

A class for representing the result of the modelSLGI function.

Slots

Observed:
Return a "numeric" vector: the observed number of synthetic genetic interactions between components of one or two cellular organizational units
Expected:
Return a matrix: the expected number of synthetic genetic interactions between components of one or two cellular organizational units

Methods

plot
Graphical representation of the permutation model result
compare
Summarizes the result of the modelSLGI function

Author(s)

N. LeMeur

See Also

modelSLGI,plot

Examples

## apply a permutation model 
 data(ScISIC)
 data(Atong)
 data(SGA)
 model <-  modelSLGI(Atong, universe= SGA, interactome=ScISIC,
  type="intM", perm=2)

model

[Package SLGI version 1.2.0 Index]