iSummary {SLGI} | R Documentation |
Summarize the cellular organizational units sharing genetic interactions and display their GO annotation if available
iSummary(iMat, n=10, reverse=FALSE)
iMat |
Comembership matrix of genes(proteins) that linked to
other genes(proteins) by any biological experiment, e.g., output of
the getInteraction function. |
n |
Numeric threshold indicating the minimum number of genetic interactions that a pair of cellular organizational unit must share. |
reverse |
Logical, by default the function return a list of pair of cellular organizational units where the name of each element is the number of genetic interactions they share. If reverse is TRUE, the output is a vector where the values are the number of interactions and the names are the combination of the 2 cellular organizational units. |
The function print the result in the standard output but can also save it
in variable.
If reverse
is FALSE the output is a list of pairs of cellular
organizational units where the name of each element is the number of
genetic interactions they share.
If reverse
is TRUE the output is a vector where the values are
the number of interactions and the names are the combination of the 2
cellular organizational units.
N. LeMeur
data(Atong) data(ScISIC) data(SGA) SLa2 <- gi2Interactome(Atong, ScISIC) ## Search for synthetic lethal interaction compM <- getInteraction(SLa2, SGA, ScISIC) ## Display the tightly interacting pairs largeInt <- iSummary(compM$bwMat,n=15)