twoWayTable {SLGI} | R Documentation |
Generate two-way table from a vector of genetic interaction status and a vector of the pairs that share a functional domain.
twoWayTable(var1, var2idx)
var1 |
Vector of the status of the first property. |
var2idx |
Vector of the index in var1 that have the
second property. |
Calculates the count numbers from the given vectors. Then put them into a matrix format.
A two-way contingency table of genetic interaction and whether sharing a functional domain.
Z. Jiang
var1 <- c(0,1,1,0,0,0,1,0,1,1) var2idx <- c(3,5,7) twoWayTable(var1,var2idx) data("AtongFnDomain") pf <- Biobase::reverseSplit(AtongFnDomain$SharedPfam) idx <- which(rownames(AtongFnDomain$pairs) %in% pf$PF00478) twoWayTable(AtongFnDomain$pairs[,"interact"],idx)