plotCytoband {SNPchip} | R Documentation |
Adds cytobands to views of chromosome copy number and genotype plots.
plotCytoband(chromosome, cytoband, cytoband.ycoords, xlim, ylim=c(0, 2), new=TRUE, label.cytoband=TRUE, label.y=NULL, srt, cex.axis=1, outer=FALSE, taper=0.15, verbose=FALSE, build="hg18", ...)
chromosome |
character string: which chromosome to draw the cytoband |
cytoband |
data.frame containing cytoband information |
cytoband.ycoords |
numeric: y coordinates |
xlim |
x-axis limits |
ylim |
y-axis limits |
new |
logical: new plotting device |
label.cytoband |
logical: if TRUE, labels the cytobands |
label.y |
numeric: height (y-coordinate) for cytoband label |
srt |
string rotation for cytoband labels. See par |
cex.axis |
size of cytoband labels. See par |
outer |
logical: whether to draw the labels in the outer margins. See par |
taper |
tapering for the ends of the cytoband |
verbose |
Logical. If TRUE, displays human genome build used to annotated the cytoband coordinates. |
build |
Character string. Currently only "hg18" is allowed. |
... |
additional arguments to plot |
Robert Scharpf and Jason Ting
plotCytoband("1")