plotSnp {SNPchip} | R Documentation |
Returns an object inheriting from class ParESet
– essentially,
a list of default graphical parameters that can be modified as needed.
The show
method for this class plots the copy number and
genotype calls versus physical position for an arbitrary number of
samples and chromosomes.
plotSnp(object, hmmPredict, ...) ## S4 method for signature 'SnpLevelSet': plot(x, y, ...)
object, x |
An object extending ParESet |
hmmPredict, y |
An object of class HmmPredict |
... |
Additional arguments to the initialization methods of
the ParESet classes |
See examples in the vignette
R. Scharpf
par
,
ParESet-class
,
ParSnpCallSet-class
,
ParSnpCopyNumberSet-class
,
ParSnpSet-class
data(sample.snpset) chr1 <- sample.snpset[chromosome(sample.snpset) == "1", 1] graph.par <- plotSnp(chr1) class(graph.par) ## Not run: graph.par ## End(Not run)