runAlignment {ScISI}R Documentation

A function to establish preliminaries for the compBijection function.

Description

This function creates the record keeping bijMat and calls the compBijection function.

Usage

runAlignment(TSNMat, estMat, c2kMat)

Arguments

TSNMat The first bipartite graph matrix
estMat The second bipartite graph matrix
c2kMat The matrix of similarity index between TSNMat and estMat

Value

The matrix bijMat with an alignment calculated by the function compBijection

Author(s)

Tony Chiang

Examples

#go = getGOInfo()
#mips = getMipsInfo()
#goM = createGOMatrix(go)
#mipsM = createMipsMatrix(mips)
#cc = runCompareComplex(mipsM, goM, byWhich = "ROW")
#align = runAlignment(mipsM, goM, cc$simInd)

[Package ScISI version 1.14.0 Index]