affyParaIntern {affyPara} | R Documentation |
Internal functions for the affyPara
package.
initAffyBatchSF(object, object.type) getAffyBatchSF() getIntensitySF(rows, refindexname) getCompIntensitySF(rows) getCompIntensityMatrixSF(rows, drop=FALSE) getFUNAffyBatchSF(FUN) writeLinesSF(data, fileName) ReadHeaderSF(object) getObjectType(object) checkPartSize(object, number.parts)
object |
An object of class AffyBatch OR a character vector with the names of CEL files OR a (partitioned) list of character vectors with CEL file names. |
object.type |
Declaration for the type of the argument object : "AffyBatch", "CELfileVec", "partCELfileList" |
rows |
Number of rows which have to be changed. |
refindexname |
The name of the array used as a reference. |
drop |
A logical value. If TRUE the dimensions of an array which have only one level will be deleted. |
FUN |
A function generating a value from a an AffyBatch. e.g. dim |
data |
A character vector, containing the data for the file. |
fileName |
A character string with the file name. |
number.parts |
Number of nodes in the computer cluster. |
Internal functions for the affyPara
package. The functions have to be used in a cluster function (e.g. clusterApply) from the SNOW package.
initAffyBatchSF
getAffyBatchSF
getIntensitySF
getCompIntensitySF
getCompIntensityMatrixSF
getFUNAffyBatchSF
writeLinesSF
ReadHeaderSF
getObjectType
checkPartSize
Markus Schmidberger schmidb@ibe.med.uni-muenchen.de, Ulrich Mansmann mansmann@ibe.med.uni-muenchen.de