plotRG {beadarray} | R Documentation |
Plot R versus G intensities fom a BeadLevelList
object.
plotRG(BLData, ProbeIDs=NULL, BeadIDs=NULL, log=TRUE, arrays=1, xlim=c(8,16), ylim=c(8,16), xlab="G intensities", ylab="R intensities", main=arrayNames(BLData)[arrays], smooth=TRUE, cols=NULL, ...)
BLData |
BeadLevelList |
ProbeIDs |
a vector of ProbeIDs to plot |
BeadIDs |
logical/integer vector specifying which rows of data from
BeadLevelList to plot (used if ProbeIDs is NULL ) |
log |
logical, if TRUE, take log base 2 of intensities |
arrays |
which array/s to plot |
xlim |
x-axis limits for plot |
ylim |
y-axis limits for plot |
xlab |
character string specifying x-axis label |
ylab |
character string specifying y-axis label |
main |
main plot title |
smooth |
logical, whether to smooth the points (only used when one array is selected for plotting) |
cols |
colours to use on the plot |
... |
further graphical parameters to plot |
The R and G intensities from selected beads and arrays are plotted.
Plot is produced on the current graphical device.
Matt Ritchie