plotRG {beadarray}R Documentation

Plot bead-level data: R vs G intensities

Description

Plot R versus G intensities fom a BeadLevelList object.

Usage

plotRG(BLData, ProbeIDs=NULL, BeadIDs=NULL, log=TRUE, arrays=1,
                   xlim=c(8,16), ylim=c(8,16), xlab="G intensities",
                   ylab="R intensities",
                   main=arrayNames(BLData)[arrays], smooth=TRUE,
                   cols=NULL, ...)

Arguments

BLData BeadLevelList
ProbeIDs a vector of ProbeIDs to plot
BeadIDs logical/integer vector specifying which rows of data from BeadLevelList to plot (used if ProbeIDs is NULL)
log logical, if TRUE, take log base 2 of intensities
arrays which array/s to plot
xlim x-axis limits for plot
ylim y-axis limits for plot
xlab character string specifying x-axis label
ylab character string specifying y-axis label
main main plot title
smooth logical, whether to smooth the points (only used when one array is selected for plotting)
cols colours to use on the plot
... further graphical parameters to plot

Details

The R and G intensities from selected beads and arrays are plotted.

Value

Plot is produced on the current graphical device.

Author(s)

Matt Ritchie


[Package beadarray version 1.10.0 Index]