getSNP {biomaRt}R Documentation

Retrieves SNP's between a given chromosome start and end position

Description

Retrieves SNP's given a chromosome name, a start and end position

Usage

getSNP( chromosome, start, end, mart)

Arguments

chromosome Chromosome name
start Start position on given chromosome
end End position on given chromosome
mart object of class Mart created using the useMart function

Author(s)

Steffen Durinck

Examples

if(interactive()){
mart <- useMart("snp",dataset="hsapiens_snp")

snp = getSNP(chromosome = 8, start = 148350, end = 148612, mart = mart)
show(snp)

}

[Package biomaRt version 1.16.0 Index]