makePalCon {cosmo}R Documentation

Constructing a palindromic constraint

Description

This function constructs a texttt{palCon} object representing a constraint on the unknown position weight matrix that requires the two intervals to be palindromes of each other.

Usage

makePalCon(int1, int2, errBnd)

Arguments

int1 numeric the first interval
int2 numeric the second interval
errBnd numeric bound on how much corresponding nucleotide frequency are allowed to deviate from each other

Value

An object of class texttt{palCon}.

Author(s)

Fabian Gallusser, fgallusser@berkeley.edu

See Also

boundCon, subMotifCon, palCon, posFreqCon, shapeDiffCon, palCon

Examples

pfc <- makePalCon(1, 3, 0.05)

[Package cosmo version 1.8.0 Index]