makePalCon {cosmo} | R Documentation |
This function constructs a texttt{palCon} object representing a constraint on the unknown position weight matrix that requires the two intervals to be palindromes of each other.
makePalCon(int1, int2, errBnd)
int1 |
numeric the first interval |
int2 |
numeric the second interval |
errBnd |
numeric bound on how much corresponding
nucleotide frequency are allowed to deviate from each other |
An object of class texttt{palCon}.
Fabian Gallusser, fgallusser@berkeley.edu
boundCon
, subMotifCon
, palCon
, posFreqCon
, shapeDiffCon
, palCon
pfc <- makePalCon(1, 3, 0.05)