postProbs-class {cosmo} | R Documentation |
An object of class "postProbs"
collects information about the
posterior probability of motif occurrences in each of the eligible
positions of the input sequences. Most notably these probabilities can
be plotted using the plot function.
Objects can be created by calls of the form new("postProbs", ...)
.
seqMat
:"matrix"
The sequences
in numerical matrix format as output by cosmo.seqNames
:"list"
A list of the sequence names.probs
:"numeric"
A matrix of the posterior probabilities.revcomp
:"logical"
A matrix indicating whether
the motif is more likely to occure in the reverse complement orientation.
signature(x = "postProbs")
Plots the
posterior probabilities. If the motif is more likely to occur in the
forward strand orientation, the bar extends upward from the
horizontal, otherwise it extends downward.Oliver Bembom, bembom@berkeley.edu