deDGEList-class {edgeR}R Documentation

differential expression of Digital Gene Expression data - class

Description

A simple list-based class for storing results of differential expression analysis for DGE data

Slots/List Components

Objects of this class contain the following list components:
ps: list containing estimates of p parameter.
r: numeric vector of size parameter (1/phi) where phi is negative binomial dispersion.
pseudo: numeric matrix with the pseudo-counts.
M: numeric scalar with the library size that pseudo counts are mapped to.
exact: numeric vector of exact p-values (unadjusted).

Methods

This class inherits directly from class list so any operation appropriate for lists will work on objects of this class. deDGEList objects also have a show method.

Author(s)

Mark Robinson


[Package edgeR version 1.0.4 Index]