probeset.stats {exonmap}R Documentation

Generates summary statistics showing intron, exon and gene hits for the spefied probeset list

Description

Each column represent the uniqueness of a probeset's hits to the genome, exons or introns. Each value in a column is 0 or a positive integer. If the value is zero then one or more probes within the probeset do not match the genome (or exons, or introns). Values of 1 correspond to probesets where each probe matches once and only once; values > 1 correspond to probesets where 1 or more probes hit multiple times. For more details see the package vignette.

Usage

 
  probeset.stats(probesets) 

Arguments

probesets a probeset list

Value

A data frame with gene, exon and intron matches for each probeset.

Author(s)

Crispin. J. Miller, Michal Okoniewski

References

http://bioinformatics.picr.man.ac.uk/

See Also

select.probewise exclude.probewise

Examples

 
  if(interactive()) {
    xmapConnect()
    probesets <- gene.to.probeset("ENSG00000005893"); 
    probeset.stats(probesets)
  }

[Package exonmap version 2.0.03 Index]