details {exonmap}R Documentation

Get detailed annotation for exons, transcripts and genes

Description

Given a character vector of Ensembl database names, get more detailed annotation from X:Map.

Usage

  gene.details(v)
  transcript.details(v)
  exon.details(v)

Arguments

v A character vector of database identifiers

Details

Connects to the X:Map database to retrieve data. Before these functions can be used, xmapConnect must have been called.

Value

A data.frame.

Author(s)

C.J. Miller, M.J. Okoniewski

References

http://xmap.picr.man.ac.uk

See Also

xmapConnect filters mappings

Examples

  if(interactive()) {
    xmapConnect()
    gene        <-  probeset.to.gene(c("3743919"))
    transcripts <- gene.to.transcript(gene)
    exons       <- gene.to.exon(gene)
    gene.details(gene)
    transcript.details(transcripts)
    exon.details(exons)
  }

[Package exonmap version 2.0.03 Index]