qaProcess.timeline {flowQ}R Documentation

Create QA process of type 'timeline'

Description

This function takes a flowSet as input and creates all necessary output for a 'timeline' type QA process. Objects created by this function can be laid out as HTML using writeQAReport.

Usage


qaProcess.timeline(set, channels=NULL, outdir, cutoff=1,
  name="time line", sum.dimensions=NULL, det.dimensions=c(7,7),
  ...)

Arguments

set A flowSet
channels A character vector of channel names for which the qaReport is to be produced
outdir The directory to which the graphical output is to be saved. If multiple QA processes are to be combined, make sure to use the same directory every time.
cutoff The threshold at which the QA process is considered to be failed. An absolute value in the timeline deviation score as computed by the timeLinePlot function
name The name of the process used for the headings in the HTML output
sum.dimensions, det.dimensions The pdf dimensions used for the summary and the detailed plots.
... Further arguments.

Details

QA processes of type 'timeline' detect unusal patterns in the acquisition of fluorescense and light scatter measurements over time.

For more details on how to layout qaProcess objects to HTML, see writeQAReport and qaReport.

Value

An object of class qaProcess.

Author(s)

Florian Hahne

See Also

writeQAReport, qaReport, qaProcess, qaProcess.marginevents, qaProcess.timeflow, qaProcess.cellnumber

Examples

## Not run: 
data(GvHD)
GvHD <- transform(GvHD, "FL1-H"=asinh(`FL1-H`), "FL2-H"=asinh(`FL2-H`))
dest <- tempdir()
qp <- qaProcess.timeline(GvHD, channel="FL1-H", outdir=dest, cutoff=1)
qp
## End(Not run)


[Package flowQ version 1.2.0 Index]