qaProcess.timeline {flowQ} | R Documentation |
This function takes a flowSet
as input and
creates all necessary output for a 'timeline' type QA process. Objects
created by this function can be laid out as HTML using
writeQAReport
.
qaProcess.timeline(set, channels=NULL, outdir, cutoff=1, name="time line", sum.dimensions=NULL, det.dimensions=c(7,7), ...)
set |
A flowSet |
channels |
A character vector of channel names for which the qaReport is to be produced |
outdir |
The directory to which the graphical output is to be saved. If multiple QA processes are to be combined, make sure to use the same directory every time. |
cutoff |
The threshold at which the QA process is considered to
be failed. An absolute value in the timeline deviation score as
computed by the timeLinePlot function |
name |
The name of the process used for the headings in the HTML output |
sum.dimensions, det.dimensions |
The pdf dimensions used for the summary and the detailed plots. |
... |
Further arguments. |
QA processes of type 'timeline' detect unusal patterns in the acquisition of fluorescense and light scatter measurements over time.
For more details on how to layout qaProcess
objects to
HTML, see writeQAReport
and qaReport
.
An object of class qaProcess
.
Florian Hahne
writeQAReport
, qaReport
,
qaProcess
, qaProcess.marginevents
,
qaProcess.timeflow
, qaProcess.cellnumber
## Not run: data(GvHD) GvHD <- transform(GvHD, "FL1-H"=asinh(`FL1-H`), "FL2-H"=asinh(`FL2-H`)) dest <- tempdir() qp <- qaProcess.timeline(GvHD, channel="FL1-H", outdir=dest, cutoff=1) qp ## End(Not run)