equivSummary {goProfiles} | R Documentation |
Function to return a brief summary of the equivalence test between two profiles.
If In its current version it is better that equivalentGOProfiles
is called with option
simplify
set to FALSE
before equivSummary
can be used
equivSummary(l, decs = 6)
l |
A list of comparison results as returned by a call to texttt{compareGenelists} |
decs |
Number of decimal places to use in the output |
A data frame with the summarized results of each comparison. The values contained are: texttt{Sqr.Eucl.Dist}: The squared euclidean distance, texttt{Standard Err}: The standard error estimate, texttt{pValue} p value of the equivalence test, texttt{up conf.int}Upper value for the desired condfidence interval. texttt{d0}Threshold value for equivalence test. texttt{Equivalent?}Numerical value set to 1 if profiles can be considered equivalent and to zero if they cannot.
Alex Sanchez
data(sampleProfiles) comparedMF <-compareGOProfiles (pn=expandedWelsh01[['MF']], qm = expandedSingh01[['MF']], pqn0= commonExpandedWelsh01Singh01[['MF']]) equivMF<- equivalentGOProfiles(comparedMF) print(equivSummary(equivMF, decs=5))