plotProfiles {goProfiles} | R Documentation |
Plots basic functional profiles created with the 'basicProfile' instruction. If several profiles have to be plot together they must be first merged using the 'mergeProfiles' function. The labels of the Y-axis of the plots are the descriptions of the GO Terms. If the label is longer than 20 characters it is truncated and ended by three dots.
plotProfiles(aProf, aTitle = "Functional Profile", anOnto = NULL, percentage = FALSE, HORIZVERT = TRUE, legendText = NULL, colores = c("white", "red"), multiplePlots = F, multipleWindows = T, labelWidth=25,...)
aProf |
Functional profile to plot |
aTitle |
Title for the figures |
anOnto |
Ontology (to appear in the title) |
percentage |
Plot absolute or relative frequencies (not summing to 100) |
HORIZVERT |
Plot horizontal or vertical bars |
legendText |
Text of the legend for the plot |
colores |
Colors to be used |
multiplePlots |
Plot all profiles for a given dataset in one figure |
multipleWindows |
Open a new window after each plot |
labelWidth |
Width of Y axis labels (Names of GO categories) in the plot |
... |
Other graphical parameters that should be passed for plotting |
The plot
Alex Sanchez
data(sampleProfiles) plotProfiles(basicWelsh01[['MF']],'Functional profiles for Welsh dataset',percentage=TRUE) merged<-mergeProfilesLists (basicSingh01, basicWelsh01, profNames=c('Welsh','Singh')) plotProfiles(merged, percentage=TRUE, multiplePlots=TRUE, labelWidth=30)