printProfiles {goProfiles}R Documentation

Print functional profiles

Description

Prints basic functional profiles created with the 'basicProfile' instruction. Allows for several formatting operations such as truncating long labels, removing empty categories or choosing between absolute or relative frequencies. If several profiles have to be printed together they must be first merged using the 'mergeProfiles' function.

Usage

printProfiles(aProf, aTitle = "Functional Profile", anOnto = NULL, percentage = FALSE, 
      Width=25, emptyCats=FALSE)

Arguments

aProf Functional profile to plot
aTitle Title for the figures
anOnto Ontology (to appear in the title)
percentage Plot absolute or relative frequencies (not summing to 100)
Width Maximum width for the description of GO categories
emptyCats Set to 'TRUE' if empty categories should appear in the profile

Value

The printout

Author(s)

Alex Sanchez

Examples

data(sampleProfiles)
printProfiles(basicWelsh01[['MF']],'Functional profiles for Welsh dataset', anOnto='MF', percentage=TRUE)
printProfiles(basicWelsh01,'Functional profiles for Welsh dataset',anOnto='MF', percentage=TRUE, emptyCats=TRUE)
merged<-mergeProfilesLists (basicSingh01, basicWelsh01, profNames=c('Welsh','Singh'))
printProfiles(merged, percentage=TRUE, emptyCats=TRUE)

[Package goProfiles version 1.4.0 Index]