as.hdist |
Class "hdist" - S4 class to hold distance matrices. |
as.hdist,matrix-method |
Class "hdist" - S4 class to hold distance matrices. |
as.matrix,hdist-method |
Class "hdist" - S4 class to hold distance matrices. |
as.vector,hdist,missing-method |
Class "hdist" - S4 class to hold distance matrices. |
boot2fuzzy |
function to write MapleTree files for viewing bootstrap estimated cluster membership probabilities based on hopach clustering results |
boothopach |
functions to perform non-parametric bootstrap resampling of hopach clustering results |
bootmedoids |
functions to perform non-parametric bootstrap resampling of hopach clustering results |
bootplot |
function to make a barplot of bootstrap estimated cluster membership probabilities |
coerce,hdist,matrix-method |
Class "hdist" - S4 class to hold distance matrices. |
coerce,matrix,hdist-method |
Class "hdist" - S4 class to hold distance matrices. |
correlationordering |
function to compute empirical correlation between distance in a list and distance by a metric |
dim,hdist-method |
Class "hdist" - S4 class to hold distance matrices. |
dissmatrix |
functions to compute pair wise distances between vectors |
dissvector |
functions to compute pair wise distances between vectors |
distancematrix |
functions to compute pair wise distances between vectors |
distancevector |
functions to compute pair wise distances between vectors |
dplot |
function to make a pseudo-color image of a distance matrix with the row and column ordering based on HOPACH clustering results. |
golub |
Gene expression dataset from Golub et al. (1999) |
hdist |
Class "hdist" - S4 class to hold distance matrices. |
hdist-class |
Class "hdist" - S4 class to hold distance matrices. |
hopach |
function to perform HOPACH hierarchical clustering |
hopach2tree |
function to write MapleTree files for viewing hopach hierarchical clustering results |
improveordering |
function to compute empirical correlation between distance in a list and distance by a metric |
is.hdist |
Class "hdist" - S4 class to hold distance matrices. |
labels,hdist-method |
Class "hdist" - S4 class to hold distance matrices. |
labelstomss |
Functions to compute silhouettes and split silhouettes |
length,hdist-method |
Class "hdist" - S4 class to hold distance matrices. |
makeoutput |
function to write a text file with hopach output |
makeTree |
function to write MapleTree files for viewing hopach hierarchical clustering results |
msscheck |
Functions to compute silhouettes and split silhouettes |
prune |
function to prune a HOPACH tree. |
show,hdist-method |
Class "hdist" - S4 class to hold distance matrices. |
silcheck |
Functions to compute silhouettes and split silhouettes |
vectmatrix |
functions to compute pair wise distances between vectors |
[,hdist-method |
Class "hdist" - S4 class to hold distance matrices. |