plotControlData {lumi}R Documentation

Plot the mean expression (with standard deviation bar) of different type of control probes

Description

Plot the mean expression (with standard deviation bar) of different type of control probes. Multiple control types can be plotted in a single plot. The available control types can be get by running getControlType(controlData).

Usage

plotControlData(controlData, type = NULL, slideIndex = NULL, logMode = FALSE, new = TRUE, ...)

Arguments

controlData a LumiBatch object including control data or a control data data.frame
type the control probe type (case insensitive), which can be get by running getControlType(controlData)
slideIndex the slide index or ID corresponding to each sample
logMode whether show the data in log2 scale
new whether refresh the new plot or add it on the old one
... other parameters used by default plot function

Details

When multiple control types are selected, they will be plotted in a two-column plot.

Value

plot the picture and return TRUE if everything is OK

Author(s)

Pan Du

See Also

addControlData2lumi

Examples

        controlFile <- system.file('doc', 'Control_Probe_Profile.txt', package='lumi')
        controlData <- getControlData(controlFile)
        getControlType(controlData)
        plotControlData(controlData, type='NEGATIVE')

[Package lumi version 1.8.3 Index]