kernelizeAll {macat} | R Documentation |
'kernelizeAll' smoothes complete expression matrix and writes the result into one text file for each chromosome. These text files can be read into Python.
kernelizeAll(data, step.width = 1e+05, kernel = rbf, kernelparams = list(gamma = 1/10^13))
data |
MACATData Object |
step.width |
size of steps for kernelization |
kernel |
kernel function one of rbf, kNN, basePairDistance or your owm |
kernelparams |
list of named kernel parameters |
filename of the python flatfiles:
kernelized_seq_chrom_<chrom>.py
where <chrom> is the name of the chromosome.
does not return anything; called for its side-effect that is to produce Python-readable text files
The MACAT Development Team
## Not run: # !!! takes quite some time !!! loaddatapkg("stjudem") kernelizeAll(stjude) ## End(Not run)