syn.data {minet}R Documentation

Simulated Gene Expression Data

Description

Dataset containing 100 samples and 50 genes generated by the publicly available SynTReN generator using a yeast source network - see syn.net

Usage

data(syn.data)

Format

syn.data is a data frame containing 100 rows and 50 columns. Each row contains a microarray experiment and each column contains a gene.

Source

  • SynTReN 1.1.3
  • source network : yeast_nn.sif

    References

    Tim Van den Bulcke, Koenraad Van Leemput, Bart Naudts, Piet van Remortel, Hongwu Ma, Alain Verschoren, Bart De Moor, and Kathleen Marchal. Syntren : a generator of synthetic gene expression dataset for design and analysis of structure learning algorithms. BMC Bioinformatics, 2006.

    Examples

    
    data(syn.data)
    data(syn.net)
    syn.data <- discretize(syn.data)
    mim <- build.mim(syn.data)
    infered.net <- mrnet(mim)
    max(fscores(validate( infered.net, syn.net )))
    

    [Package minet version 1.2.0 Index]