justSNPRMA {oligo}R Documentation

Summarization of SNP data

Description

This function implements the SNPRMA method for summarization of SNP data. It works directly with the CEL files, saving memory.

Usage

justSNPRMA(filenames, verbose = TRUE, phenoData = NULL, normalizeToHapmap = TRUE)

Arguments

filenames character vector with the filenames.
verbose logical flag for verbosity.
phenoData a phenoData object or NULL
normalizeToHapmap Normalize to Hapmap? Should always be TRUE, but it's kept here for future use.

Value

SnpQSet or a SnpCnvQSet, depending on the array type.

See Also

~~objects to See Also as help, ~~~

Examples

## snprmaResults <- justSNPRMA(list.celfiles())

[Package oligo version 1.6.0 Index]