justSNPRMA {oligo} | R Documentation |
This function implements the SNPRMA method for summarization of SNP data. It works directly with the CEL files, saving memory.
justSNPRMA(filenames, verbose = TRUE, phenoData = NULL, normalizeToHapmap = TRUE)
filenames |
character vector with the filenames. |
verbose |
logical flag for verbosity. |
phenoData |
a phenoData object or NULL |
normalizeToHapmap |
Normalize to Hapmap? Should always be TRUE, but it's kept here for future use. |
SnpQSet
or a SnpCnvQSet
, depending on the array type.
~~objects to See Also as help
, ~~~
## snprmaResults <- justSNPRMA(list.celfiles())