pamr-internal {pamr} | R Documentation |
Internal pamr functions
pamr.pairscore(x, pair.ind=NULL) pamr.pvalue.survival(group, survival.time, censoring.status, ngroup.survival) pamr.score.to.class1(x, scores, cutoff=2, n.class=2) pamr.score.to.class2(x, scores, cutoff=2, n.pc=1, n.class=2) pamr.knnimpute.old(data, k = 10) pamr.cube.root(x) print.nsc(x, ...) print.nsccv(x, ...) print.pamrtrained(x, ...) print.pamrcved(x, ...) pamr.xl.error.trace() pamr.xl.get.threshold.range(fit) pamr.xl.get.soft.class.labels(fit, survival.times, censoring.status) pamr.xl.compute.offset(data, offset.percent=50, prior=prior) pamr.xl.get.offset() pamr.xl.derive.adjusted.prior(prior, data) pamr.xl.get.default.training.parameters(data) pamr.xl.get.uniform.prior(data, nclasses=NULL) pamr.xl.get.sample.prior(data) pamr.xl.get.class.names() pamr.xl.get.class.labels() pamr.xl.get.number.of.classes() pamr.xl.process.data(use.old.version=FALSE) pamr.xl.compute.cv.confusion (fit, cv.results, threshold) pamr.xl.compute.confusion (fit, threshold) pamr.xl.is.a.subset(a, y) pamr.xl.listgenes.compute (fit, data, threshold, fitcv=NULL, genenames = FALSE) pamr.xl.plot.test.probs.compute(fit, new.x, newx.classes, missing.class.label,threshold, sample.labels=NULL) pamr.xl.plot.training.error.compute(trained.object) pamr.xl.plotcen.compute(fit, data, threshold) pamr.xl.plotcv.compute(aa) pamr.xl.plotcvprob.compute(fit, data, threshold) pamr.xl.predict.test.class(fit, newx, threshold, test.class.labels) pamr.xl.predict.test.surv.class(fit, newx, threshold, survival.times, censoring.status) pamr.xl.predict.test.class.only(fit, newx, threshold) pamr.xl.predict.test.probs(fit, newx, threshold) pamr.xl.test.data.impute(x, k, use.old.version=FALSE) pamr.xl.test.errors.surv.compute(fit, newx, threshold=fit$threshold, survival.times, censoring.status) pamr.xl.test.errors.compute(fit, newx, newx.classes, threshold=fit$threshold, prior = fit$prior, threshold.scale = fit$threshold.scale, ...) pamr.xl.transform.class.labels(x) pamr.xl.transform.data(data) pamr.xl.transform.test.data(test.x) pamr.xl.plotsurvival(fit, data, threshold) pamr.xl.plotsurvival.test(fit, newx, survival.time, censoring.status, threshold) pamr.xl.plotsurvival.strata(fit, data) pamr.xl.test.get.soft.classes(fit, survival.times, censoring.status) pamr.xl.get.soft.class.labels(fit, survival.times, censoring.status)
These are not to be called by the user.
Balasubramanian Narasimhan and Rob Tibshirani