pwayGraph-class {pathRender} | R Documentation |
extension to graphNEL for pathway rendering
Objects can be created by calls of the form
new("pwayGraph", nodes, edgeL, edgemode)
.
There is a plot method that will work reasonably well if the plotting surface is big enough.
pwaySource
:"character"
KEGG or BIOCARTA nodes
:"vector"
pathway constituents in the native vocabulary edgeL
:"list"
constituent
relations in the native vocabulary edgemode
:"character"
directed,
typically edgeData
:"attrData"
relationship
attributes nodeData
:"attrData"
node
attributes graphData
:"list"
this holds
the special rendering attributes for edges and nodes, for nodes it
seems particularly important to have fixedsize = FALSE
Class graphNEL-class
, directly.
Class graph-class
, by class "graphNEL", distance 2.
signature(x = "pwayGraph")
: renders the pathway Vince Carey <stvjc@channing.harvard.edu>
showClass("pwayGraph") G1 = graphcMAP("stresspathway") G1@graphData$nAttrs$labels[1:10]