makePdInfoPackage {pdInfoBuilder} | R Documentation |
This generic function create a platform design info package based on
the parameters contained in object
which will generally be an
instance of a subclass of PkgSeed
. The result is a new
directory on the filesystem containing the source for the generated
pdInfo package.
makePdInfoPackage(object, destDir, batch_size = 10000, quiet = FALSE)
object |
See showMethods("makePdInfoPackage") to see
available methods. |
destDir |
Path where the resulting pdInfo package source directory will be written. |
batch_size |
An integer controlling the size of batches
processed when reading the flatfiles and loading the DB. In
general, larger
values of batch_size will use more memory and less time
(unless you exceed physical memory, in which case more time will be
used as well). |
quiet |
A logical value. When TRUE , diagnostic and
status messages are not printed. |
In general, creating the SQLite database will be a time and memory intensive task.
This function is called for its side-effect of producing a pdInfo source package directory.
Seth Falcon
cdfFile <- "Mapping250K_Nsp.cdf" csvAnno <- "Mapping250K_Nsp_annot.csv" csvSeq <- "Mapping250K_Nsp_probe_tab" pkg <- new("AffySNPPDInfoPkgSeed", version="0.1.5", author="A.U. Thor", email="au@thor.net", biocViews="AnnotationData", genomebuild="NCBI Build 35, May 2004", cdfFile=cdfFile, csvAnnoFile=csvAnno, csvSeqFile=csvSeq) ## Not run: makePdInfoPackage(pkg, destDir=".") ## End(Not run)