pumaPCARes-class {puma} | R Documentation |
This is a class representation for storing the outputs of the pumaPCA function. Objects of this class should usually only be created through the pumaPCA
function.
Objects can be created by calls of the form new("pumaPCARes", ...)
.
model
:expectations
:varY
:Y
:phenoData
:timeToCompute
:pumaPCA
to runnumberOfIterations
:pumaPCA
to convergelikelihoodHistory
:pumaPCA
was runningtimingHistory
:pumaPCA
was runningmodelHistory
:pumaPCA
was runningexitReason
:pumaPCA
halted. Can take the values "Update of Likelihood less than tolerance x", "Update of W less than tolerance x", "Iterations exceeded", "User interrupt", "unknown exit reason"signature(x="pumaPCARes-class")
: plots two principal components on a scatter plot.signature(x = "pumaPCARes-class")
: writes the principal components for each array to a file. It takes the same arguments as write.table
. The argument "file" does not need to set any extension. The file name and extension "csv" will be added automatically. The default file name is "tmp". Richard D. Pearson
Related method pumaPCA
and related class pumaPCARes
.