ucscView-class {rtracklayer}R Documentation

Class "ucscView"

Description

An object representing a view of a genome in the UCSC browser.

Objects from the Class

Objects are created by calling browserView(session, ...) where session is a ucscSession.

Slots

hgsid:
Object of class "numeric", which identifies this view to UCSC.
session:
Object of class "browserSession" to which this view belongs.

Extends

Class "browserView", directly.

Methods

activeView(object)
Obtains a logical indicating whether this view is the active view.
genomeSegment(object)
Obtains the genomeSegment displayed by this view.
genomeSegment(object) <- value
Sets the genomeSegment displayed by this view.
tracks(object)
Gets the names of the visible tracks in this view.
tracks(object) <- value
Sets the visible tracks by name.
ucscTrackModes(object)
Obtains the ucscTrackModes for this view.
ucscTrackModes(object) <- value
Sets the ucscTrackModes for this view. The value may be either a ucscTrackModes instance or a character vector that will be coerced by a call to ucscTrackModes.

Author(s)

Michael Lawrence

See Also

browserView for creating instances of this class.


[Package rtracklayer version 1.2.2 Index]