browserView-methods {rtracklayer} | R Documentation |
Methods for creating and getting browser views.
browserView(object, segment = genomeSegment(object), track = tracks(object), ...)
object |
The object from which to get the views. |
segment |
The genomeSegment to display. |
track |
List of track names to make visible in the view. |
... |
Arguments to pass to methods |
The following methods are defined by rtracklayer.
browserView(object, segment =
genomeSegment(object), track = tracks(object), ...)
: Creates a
browserView
of segment
with visible
tracks specified by track
. track
may be an instance
of ucscTrackModes
. Arguments in ...
should
override slots in segment
or else match parameters
to a ucscTrackModes
method for creating a
ucscTrackModes
instance that will override modes indicated
by the track
parameter. browserView(object, segment =
genomeSegment(object), track = tracks(object, segment, TRUE),
...)
: Creates a browserView
of
segment
with visible tracks named in
track
. Parameters in ...
correspond to slots in
the genomeSegment
class and override those in
segment
. ## Not run: session <- browserSession() browserView(session, genomeSegment(start = 20000, end = 50000, segment = genomeSegment(session))) ## equivalent to above, but shorter browserView(session, start = 20000, end = 50000) ## only view "knownGene" track browserView(session, track = "knownGene") ## End(Not run)