chrid |
Getting chromosome ids |
chrid,ANY-method |
Getting chromosome ids |
chrid,character-method |
Getting chromosome ids |
chrid,trackSet-method |
Getting chromosome ids |
chrid-class |
Class "chrid" |
chrid-methods |
Getting chromosome ids |
chrom,genomeSegment-method |
Class "genomeSegment" |
chrom,trackSet-method |
Class "trackSet" |
chrom<-,genomeSegment-method |
Class "genomeSegment" |
close,argoSession-method |
Class "argoSession" |
close,argoView-method |
Class "argoView" |
coerce,basicTrackLine,character-method |
Class "basicTrackLine" |
coerce,basicTrackLine,wigTrackLine-method |
Class "wigTrackLine" |
coerce,character,basicTrackLine-method |
Class "basicTrackLine" |
coerce,character,ucscTrackLine-method |
Class "ucscTrackLine" |
coerce,character,wigTrackLine-method |
Class "wigTrackLine" |
coerce,trackSet,data.frame-method |
Class "trackSet" |
coerce,ucscTrackLine,character-method |
Class "ucscTrackLine" |
coerce,wigTrackLine,basicTrackLine-method |
Class "wigTrackLine" |
coerce,wigTrackLine,character-method |
Class "wigTrackLine" |
cpneTrack |
CPNE1 SNP track |
end,genomeSegment-method |
Class "genomeSegment" |
end,trackSet-method |
Class "trackSet" |
end<-,genomeSegment-method |
Class "genomeSegment" |
export |
Export objects to connections |
export,ANY,ANY,character-method |
Export objects to connections |
export,ANY,character,character-method |
Export objects to connections |
export,ANY,character,missing-method |
Export objects to connections |
export,ANY,missing,character-method |
Export objects to connections |
export.bed |
Export tracks |
export.bed,trackSet-method |
Export tracks |
export.bed,ucscTrackSet-method |
Class "ucscTrackSet" |
export.gff |
Export tracks |
export.gff,trackSet-method |
Export tracks |
export.gff,ucscTrackSet-method |
Class "ucscTrackSet" |
export.gff1 |
Export tracks |
export.gff1,ANY-method |
Export tracks |
export.gff2 |
Export tracks |
export.gff2,ANY-method |
Export tracks |
export.gff3 |
Export tracks |
export.gff3,ANY-method |
Export tracks |
export.ucsc |
Export tracks |
export.ucsc,trackSet-method |
Export tracks |
export.ucsc,trackSets-method |
Export tracks |
export.ucsc,ucscTrackSet-method |
Class "ucscTrackSet" |
export.wig |
Export tracks |
export.wig,trackSet-method |
Export tracks |
genome,genomeSegment-method |
Class "genomeSegment" |
genome,trackSet-method |
Class "trackSet" |
genome<-,genomeSegment-method |
Class "genomeSegment" |
genomeBrowsers |
Get available genome browsers |
genomeSegment |
Accessing a segment of a genome |
genomeSegment,argoView-method |
Accessing a segment of a genome |
genomeSegment,browserSession-method |
Accessing a segment of a genome |
genomeSegment,character-method |
Accessing a segment of a genome |
genomeSegment,IRanges-method |
Accessing a segment of a genome |
genomeSegment,missing-method |
Accessing a segment of a genome |
genomeSegment,trackSet-method |
Accessing a segment of a genome |
genomeSegment,trackSets-method |
Accessing a segment of a genome |
genomeSegment,ucscCart-method |
Accessing a segment of a genome |
genomeSegment,ucscSession-method |
Accessing a segment of a genome |
genomeSegment,ucscView-method |
Accessing a segment of a genome |
genomeSegment-class |
Class "genomeSegment" |
genomeSegment-methods |
Accessing a segment of a genome |
genomeSegment<-,argoView-method |
Accessing a segment of a genome |
genomeSegment<-,ucscView-method |
Accessing a segment of a genome |
genomeSequence |
Retrieving a genome sequence |
genomeSequence,argoSession-method |
Retrieving a genome sequence |
genomeSequence,ucscSession-method |
Retrieving a genome sequence |
genomeSequence-methods |
Retrieving a genome sequence |
trackData |
Get track data |
trackData,trackSet-method |
Get track data |
tracks |
Accessing track names |
tracks,argoSession-method |
Accessing track names |
tracks,argoView-method |
Accessing track names |
tracks,ucscSession-method |
Accessing track names |
tracks,ucscTrackModes-method |
Accessing track names |
tracks,ucscView-method |
Accessing track names |
tracks-methods |
Accessing track names |
tracks<-,argoView-method |
Accessing track names |
tracks<-,ucscTrackModes-method |
Accessing track names |
tracks<-,ucscView-method |
Accessing track names |
tracks<--methods |
Accessing track names |
trackSet |
Get a trackSet |
trackSet,AnnotatedDataFrame-method |
Get a trackSet |
trackSet,argoSession-method |
Get a trackSet |
trackSet,character-method |
Get a trackSet |
trackSet,data.frame-method |
Get a trackSet |
trackSet,IRanges-method |
Get a trackSet |
trackSet,ucscSession-method |
Get a trackSet |
trackSet-class |
Class "trackSet" |
trackSet-methods |
Get a trackSet |
trackSets |
Getting a list of trackSets |
trackSets,list-method |
Getting a list of trackSets |
trackSets,missing-method |
Getting a list of trackSets |
trackSets,trackSet-method |
Getting a list of trackSets |
trackSets-class |
Class "trackSets" |
trackSets-methods |
Getting a list of trackSets |
ucscSession-class |
Class "ucscSession" |
ucscTable |
Get a database table from UCSC |
ucscTable,ucscSession-method |
Get a database table from UCSC |
ucscTrackLine-class |
Class "ucscTrackLine" |
ucscTrackModes |
Accessing UCSC track modes |
ucscTrackModes,character-method |
Accessing UCSC track modes |
ucscTrackModes,missing-method |
Accessing UCSC track modes |
ucscTrackModes,ucscSession-method |
Accessing UCSC track modes |
ucscTrackModes,ucscTracks-method |
Accessing UCSC track modes |
ucscTrackModes,ucscView-method |
Accessing UCSC track modes |
ucscTrackModes-class |
Class "ucscTrackModes" |
ucscTrackModes-methods |
Accessing UCSC track modes |
ucscTrackModes<-,ucscView,character-method |
Accessing UCSC track modes |
ucscTrackModes<-,ucscView,ucscTrackModes-method |
Accessing UCSC track modes |
ucscTrackModes<--methods |
Accessing UCSC track modes |
ucscTrackSet-class |
Class "ucscTrackSet" |
ucscView-class |
Class "ucscView" |