plotFindArguments {siggenes} | R Documentation |
Utility function for generating a plot of the posterior probabilities in an html file when searching for the optimal value of the fudge factor in an EBAM analysis.
plotFindArguments(onlyTab = FALSE, logit = TRUE, pos.legend = NULL, legend.cex = 0.8, col = NULL, main = NULL, xlab = NULL, ylab = NULL, only.a0 = FALSE, lty = 1, lwd = 1, y.intersp = 1.1)
onlyTab |
if TRUE , then this plot is not generated and only the
table of the number of differentially expressed genes and the estimated FDR
for the different values of the fudge factor is shown |
logit |
should the posterior probabilities be logit-transformed before they are plotted? |
pos.legend |
an integer between 0 and 4. See help.finda0(plot)
for how pos.legend can be specified, and for its default |
legend.cex |
the size of the text in the legend relative to the default size |
col |
a vector specifying the colors of the lines for the different values
of the fudge factor. For a description of how colors can be specified, see
par |
main |
a character string naming the main title of the plot |
xlab |
a character string naming the label of the x axis |
ylab |
a character string naming the label of the y axis |
only.a0 |
if TRUE , only the values of a0 are shown in the
legend. If FALSE , both the values of a0 and the corresponding
number of differentially expressed genes are shown |
lty |
a value or vector specifying the line type of the curves. For details,
see par |
lwd |
a numeric value specifying the width of the plotted lines. For details,
see par |
y.intersp |
a numeric value specifying the space between the rows of the legend |
a list required by ebam2html
if findA0
is specified
Holger Schwender, holger.schw@gmx.de