A B C D E F H I L N P Q R S W Z
args.ebam | Help files or argument list for EBAM-specific methods |
args.finda0 | Help files or argument list for FindA0-specific methods |
args.sam | Help files or argument list for SAM-specific methods |
buildSNPannotation | Construct Annotation for Affymetrix SNP Chips |
cat.ebam | EBAM Analysis for Categorical Data |
cat.stat | SAM Analysis for Categorical Data |
d.stat | SAM Analysis Using a Modified t-statistic |
delta.plot | Delta Plots |
denspr | Density Estimation |
EBAM | Class EBAM |
ebam | Empirical Bayes Analysis of Microarrays |
EBAM-class | Class EBAM |
ebam2excel | CSV file of a SAM or an EBAM object |
ebam2html | HTML page for a SAM or an EBAM object |
find.a0 | Computation of the Fudge Factor |
FindA0 | Class FindA0 |
FindA0-class | Class FindA0 |
findDelta | Finding the Threshold Delta |
fudge2 | Fudge Factor |
help.ebam | Help files or argument list for EBAM-specific methods |
help.finda0 | Help files or argument list for FindA0-specific methods |
help.sam | Help files or argument list for SAM-specific methods |
identify,SAM-method | Class SAM |
link.genes | Links for a list of genes |
link.siggenes | Links for a SAM or an EBAM object |
list.siggenes | List of the significant genes |
nclass.wand | Number of cells in a histogram |
pi0.est | Estimation of the prior probability |
plot,EBAM-method | Class EBAM |
plot,FindA0-method | Class FindA0 |
plot,SAM-method | Class SAM |
plotArguments | Plot Arguments |
plotFindArguments | Plot Arguments |
print,EBAM-method | Class EBAM |
print,FindA0-method | Class FindA0 |
print,SAM-method | Class SAM |
print,sumEBAM-method | Classes sumSAM and sumEBAM |
print,sumSAM-method | Classes sumSAM and sumEBAM |
qvalue.cal | Computation of the q-value |
rowRanksWilc | Rowwise Wilcoxon Rank Sum Statistics |
rowWilcoxon | Rowwise Wilcoxon Rank Sum Statistics |
SAM | Class SAM |
sam | Significance Analysis of Microarray |
SAM-class | Class SAM |
sam.dstat | SAM Analysis Using a Modified t-statistic |
sam.plot2 | SAM Plot |
sam.snp | SAM Analysis for Categorical Data |
sam.wilc | SAM Analysis Using Wilcoxon Rank Statistics |
sam2excel | CSV file of a SAM or an EBAM object |
sam2html | HTML page for a SAM or an EBAM object |
shortenGeneDescription | Shorten the Gene Description |
show,EBAM-method | Class EBAM |
show,FindA0-method | Class FindA0 |
show,SAM-method | Class SAM |
show,sumEBAM-method | Classes sumSAM and sumEBAM |
show,sumSAM-method | Classes sumSAM and sumEBAM |
siggenes2excel | CSV file of a SAM or an EBAM object |
siggenes2html | HTML page for a SAM or an EBAM object |
sumEBAM-class | Classes sumSAM and sumEBAM |
summary,EBAM-method | Class EBAM |
summary,SAM-method | Class SAM |
sumSAM-class | Classes sumSAM and sumEBAM |
wilc.ebam | EBAM Analysis Using Wilcoxon Rank Statistics |
wilc.stat | SAM Analysis Using Wilcoxon Rank Statistics |
z.ebam | EBAM analysis Using t- or F-test |
z.find | EBAM analysis Using t- or F-test |