split.SpliceSites {splicegear} | R Documentation |
Split an instance of SpliceSites into several instances of SpliceSites
## S3 method for class 'SpliceSites': split(x, f = list(typeI = NA, typeII = NA), drop=NULL, ...)
x |
an instance of class SpliceSites-class . |
f |
a list of two factors (see details). |
drop |
not used (here to keep R CMD check happy) |
... |
see drop above. |
The split usually is performed on a factor. Two factors are required
because of the two categories of splicing events (type I (deletion of
a fragment of the reference sequence) and type II (insertion of an
element of the reference sequence). A character
can be used
instead of a factor
. In this case the covariates with the
given name, in the slots spsiteIpos.pData
and
spsiteIIpos.pData
respectively, are used to make the split.
When equal to NA
, the covariate named site
will be
used.
A list of objects of class SpliceSites
data(spsites) split(spsites)