stamNet-class {stam} | R Documentation |
Objects of this class describe a network of classifiers as it is used by structured analysis of microarray data.
Objects can be created by calls of the form new("stamNet", chip, root, probes)
,
or by a call to stam.net
.
chip
root
probes
chip
:"character"
, the name of the chip for
which the classifier net is generated.root
:"character"
, the GO identifier of the
node where the generation of the classifier net is started.chippkg
:"character"
, information on the
version of the meta data package for the chipGOpkg
:"character"
, information on the version
of the meata data package on the Gene Ontologynodes
:"list"
, elements are of class
stamINode
or stamLeaf
, one for each node in the classifier net.leafs
:"numeric"
, indices of all leaf nodes in
slot nodes
inodes
:"numeric"
, indices of all inner nodes in
slot nodes
probes
:"environment"
, the corresponding index
for each probeset in the expression matrices to be analyzedsignature(x = "stamNet")
: print information on the classifier
netsignature(x = "stamNet")
: generate HTML information on the
classifier net. However, using stam.writeHTML
is recommended.Claudio Lottaz
stam.net
, stamLeaf-class
,
stamINode-class