readPrb {ShortRead} | R Documentation |
readPrb
reads all _prb.txt
files in a directory into a
single object of class SFastqQuality
. Methods do
this by identifying the maximum base call quality for each cycle and
read, and representing this as an ASCII-encoded character string
following Solexa conventions.
readPrb(dirPath, pattern = character(0), ...)
dirPath |
Directory path or other object (e.g.,
SolexaPath for which methods are defined. |
pattern |
Regular expression matching names of _prb files
to be summarized. |
... |
Additional arguments, e.g., to srapply ,
used during evaluation. |
An object of class SFastqQuality
Martin Morgan <mtmorgan@fhcrc.org>
~~objects to See Also as help
, ~~~
fl <- system.file("extdata", package="ShortRead") sp <- SolexaPath(fl) readPrb(sp, "s_1.*_prb.txt") # all tiles to a single file