report {ShortRead}R Documentation

Summarize quality assessment results into a report

Description

This generic function summarizes results from evaluation of qa into a report. Available report formats vary depending on the data analysed.

Usage

report(x, ..., dest = tempfile(), type = "pdf")

Arguments

x An object returned by qa, usually derived from class .QA
... Additional arguments used by specific methods. See specific methods for details.
dest The output destination for the final report; destination files are overwritten if they already exist.
type A text string defining the type of report; available report types depend on the type of object x.

Details

The following methods are defined:

Value

This function is invoked for its side effect; the return value is the name of the directory or file where the report was created.

Author(s)

Martin Morgan <mtmorgan@fhcrc.org>

See Also

SolexaExportQA

Examples

showMethods("report")

[Package ShortRead version 1.0.7 Index]