.callPerl | Assistant Functions |
.onLoad | Load packages and data |
.pathPerl | Assistant Functions |
aa.index | Assistant Functions |
aaClass | Assistant Functions |
aligndisHR | Homolog Reduction |
basic | Assistant Functions |
cdhitHR | Homolog Reduction |
classify | Classification |
classifyModelBAG | Classification Model |
classifyModelCTREE | Classification Model |
classifyModelCTREELIBSVM | Classification Model |
classifyModelKNN | Classification Model |
classifyModelLIBSVM | Classification Model |
classifyModelNB | Classification Model |
classifyModelNNET | Classification Model |
classifyModelRF | Classification Model |
classifyModelRPART | Classification Model |
classifyModelSVMLIGHT | Classification Model |
classifyModelTree | Classification Model |
combine | Classify Functions |
DiProDB | Assistant Functions |
distance | Homolog Reduction |
dssp.ss | Assistant Functions |
elements | Assistant Functions |
featureAAindex | Feature Coding by physicochemical/biochemical properties in AAindex |
featureACF | Feature Coding by physicochemical/biochemical properties in AAindex |
featureACH | Feature Coding by hydrophobicity |
featureACI | Feature Coding by physicochemical/biochemical properties in AAindex |
featureBDNAVIDEO | Feature Coding by DNA/RNA property |
featureBinary | Feature Coding by Binary Vectors |
featureCKSAAP | Feature Coding by k-spaced Aminoacids/Base Pairs |
featureCTD | Feature Coding by composition, transition and distribution |
featureDIPRODB | Feature Coding by Dinucleotide Property |
featureDOMAIN | Feature Coding by doamin organization |
featureFragmentComposition | Feature Coding by the composition of k-mer fragments |
featureGapPairComposition | Feature Coding by g-spaced aminoacids/bases pairs |
featureHydro | Feature Coding by hydrophobicity |
featurePseudoAAComp | Feature Coding by Pseudo Amino Acid Composiion |
featurePSSM | Feature Coding |
featureSSC | Feature Coding by secondary structure |
getDSSP | Feature Coding by secondary structure |
getNegSite | Homolog Reduction |
getTrain | Homolog Reduction |
hr | Homolog Reduction |
model | Classification Model |
performance | Performance Evaluation |
predictPFAM | Feature Coding by doamin organization |
predictPROTEUS | Feature Coding by secondary structure |
PROPERTY | Assistant Functions |
pwm | Assistant Functions |
selectFFS | Feature Selection by FFS |
selectWeka | Feature Selection by Weka |
sub.seq | Assistant Functions |