adjustP2 |
Adjust model parameter P2 |
calibReadMe |
View CALIB readme file |
cbind.ParameterList |
Combine RGList\_CALIB, SpikeList or ParameterList objects |
cbind.RGList_CALIB |
Combine RGList\_CALIB, SpikeList or ParameterList objects |
cbind.SpikeList |
Combine RGList\_CALIB, SpikeList or ParameterList objects |
coerce,RGList_CALIB,exprSet2-method |
Red, Green Intensity List - Class |
dim.RGList_CALIB |
Retrieve the Dimensions of an RGList\_CALIB or SpikeList object |
dim.SpikeList |
Retrieve the Dimensions of an RGList\_CALIB or SpikeList object |
dimnames.RGList_CALIB |
Retrieve the Dimension Names of an RGList\_CALIB or SpikeList object. |
dimnames.SpikeList |
Retrieve the Dimension Names of an RGList\_CALIB or SpikeList object. |
estimateParameter |
Estimate model parameter from spikes |
getColClasses |
Construct colClasses vector for use within read.rg function |
length.RGList_CALIB |
Retrieve the Dimensions of an RGList\_CALIB or SpikeList object |
length.SpikeList |
Retrieve the Dimensions of an RGList\_CALIB or SpikeList object |
merge.RGList_CALIB |
Merge RGList\_CALIB or SpikeList objects |
merge.SpikeList |
Merge RGList\_CALIB or SpikeList objects |
normalizeData |
Normalization: estimation of absolute expression levels |
normdata |
Example of normalized data |
parameter |
Calibration Model parameter: ParameterList Example |
ParameterList-class |
Class "ParameterList" - List to store all the parameters |
plotNormalizedData |
plot estimated absolute levels of two conditions |
plotSpikeCI |
plot spike concentration vs measured intensity |
plotSpikeHI |
plot hybridized target vs intensity |
plotSpikeRG |
plot spike intensity R vs G |
plotSpikeSpotError |
plot spot error of spikes. |
rbind.RGList_CALIB |
Combine RGList\_CALIB, SpikeList or ParameterList objects |
rbind.SpikeList |
Combine RGList\_CALIB, SpikeList or ParameterList objects |
read.rg |
Read RGList\_CALIB from Image Analysis Output Files |
read.spike |
Read SpikeList from a RGList\_CALIB and Concentration files |
RG |
Experiment Data: RGList\_CALIB Example |
RGList_CALIB-class |
Red, Green Intensity List - Class |
show,ParameterList-method |
Class "ParameterList" - List to store all the parameters |
show,RGList_CALIB-method |
Red, Green Intensity List - Class |
show,SpikeList-method |
Class "SpikeList" - Spike Intensity and Concentration List |
spike |
Experiment Data: SpikeList Example |
SpikeList-class |
Class "SpikeList" - Spike Intensity and Concentration List |
[.ParameterList |
Subset of RGList\_CALIB, SpikeList or ParameterList object |
[.RGList_CALIB |
Subset of RGList\_CALIB, SpikeList or ParameterList object |
[.SpikeList |
Subset of RGList\_CALIB, SpikeList or ParameterList object |