Identify Differentially Expressed Genes from RNA-seq data


[Package List] [Top]

Documentation for package ‘DEGseq’ version 1.0.5

User Guides and Package Vignettes

Read overview or browse directory.

Help Pages

DEGexp DEGexp: Identifying Differentially Expressed Genes from gene expression data
DEGseq DEGseq: Identify Differentially Expressed Genes from RNA-seq data
GeneExpExample1000 GeneExpExample1000
GeneExpExample5000 GeneExpExample5000
getGeneExp getGeneExp: count the number of reads and calculate the RPKM for each gene
kidneyChr21.bed kidneyChr21.bed
liverChr21.bed liverChr21.bed
readGeneExp readGeneExp: read gene expression values to a matrix
refFlatChr21 refFlatChr21
samWrapper samWrapper: A Wrapper (with some modification) of the functions in the package samr to identify differentially expressed genes for the RNA-seq data from two groups of paired or unpaired samples.