GO-terms Semantic Similarity Measures


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Documentation for package ‘GOSemSim’ version 1.4.0

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GOSemSim-package Gene Ontology-based Sematic Similarity Measures
clusterSim Semantic Similarity Between Two Gene Clusters
geneSim Semantic Similarity Between two Genes
GOSemSim Gene Ontology-based Sematic Similarity Measures
goSim Semantic Similarity Between Two GO Terms
IC Information content of GO terms
Info_Contents_BP_fly Information content of GO terms
Info_Contents_BP_human Information content of GO terms
Info_Contents_BP_mouse Information content of GO terms
Info_Contents_BP_rat Information content of GO terms
Info_Contents_BP_yeast Information content of GO terms
Info_Contents_CC_fly Information content of GO terms
Info_Contents_CC_human Information content of GO terms
Info_Contents_CC_mouse Information content of GO terms
Info_Contents_CC_rat Information content of GO terms
Info_Contents_CC_yeast Information content of GO terms
Info_Contents_MF_fly Information content of GO terms
Info_Contents_MF_human Information content of GO terms
Info_Contents_MF_mouse Information content of GO terms
Info_Contents_MF_rat Information content of GO terms
Info_Contents_MF_yeast Information content of GO terms
mclusterSim Pairwise Semantic Similarities for a List of Gene Clusters
mgeneSim Pairwise Semantic Similarity for a List of Genes
mgoSim Semantic Similarity Between two GO terms lists