colon.normal |
Gene expression data |
colon.pheno |
Covariate information for the colon data |
colon.tumour |
Gene expression data |
GAGO |
Multiple testing on the GO graph |
getFocus |
Multiple testing on the GO graph |
GlobalAncova |
Global test for differential gene expression |
GlobalAncova,matrix,formula,formula,ANY,missing,missing,missing-method |
Global test for differential gene expression |
GlobalAncova,matrix,formula,missing,ANY,missing,missing,character-method |
Global test for differential gene expression |
GlobalAncova,matrix,missing,missing,missing,ANY,ANY,missing-method |
Global test for differential gene expression |
GlobalAncova-methods |
Methods for Function GlobalAncova |
GlobalAncova.closed |
Closed testing procedure for testing several groups of genes using GlobalAncova |
GlobalAncova.closed,matrix,list,formula,formula,ANY,missing,missing,missing-method |
Closed testing procedure for testing several groups of genes using GlobalAncova |
GlobalAncova.closed,matrix,list,formula,missing,ANY,missing,missing,character-method |
Closed testing procedure for testing several groups of genes using GlobalAncova |
GlobalAncova.closed,matrix,list,missing,missing,missing,ANY,ANY,missing-method |
Closed testing procedure for testing several groups of genes using GlobalAncova |
GlobalAncova.closed-methods |
Methods for Function GlobalAncova.closed |
GlobalAncova.decomp |
GlobalAncova with sequential and type III sum of squares decomposition and adjustment for global covariates |
makeGOstructure |
Multiple testing on the GO graph |
pair.compare |
Pairwise comparisons of factor levels within GlobalAncova |
pathways |
Cancer related pathways |
phenodata |
Covariate information for the van t'Veer data |
Plot.all |
Combined visualization of sequential decomposition and influence of single genes on the GlobalAncova statistic |
Plot.genes |
Genes Plot for Global Ancova |
Plot.genes,matrix,formula,formula,ANY,missing,missing,missing-method |
Genes Plot for Global Ancova |
Plot.genes,matrix,formula,missing,ANY,missing,missing,character-method |
Genes Plot for Global Ancova |
Plot.genes,matrix,missing,missing,missing,ANY,ANY,missing-method |
Genes Plot for Global Ancova |
Plot.genes-methods |
Methods for Function Plot.genes |
Plot.sequential |
Visualization of sequential decomposition |
Plot.subjects |
Subjects Plot for GlobalAncova |
Plot.subjects,matrix,formula,formula,ANY,missing,missing,missing-method |
Subjects Plot for GlobalAncova |
Plot.subjects,matrix,formula,missing,ANY,missing,missing,character-method |
Subjects Plot for GlobalAncova |
Plot.subjects,matrix,missing,missing,missing,ANY,ANY,missing-method |
Subjects Plot for GlobalAncova |
Plot.subjects-methods |
Methods for Function Plot.subjects |
vantVeer |
Gene expression data |